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Status
Public on May 22, 2011
Title
Valencia yeast v10
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Saccharomyces cerevisiae Manufacturer
Seccion de Chips de DNA-SCSIE (University of Valencia)
Manufacture protocol
See Alberola et al. (2004), International Microbiology 7:199-206 (PMID 15492934).
Support
nylon
Description
Nylon macroarray (7 x 11 cm) with 6144 positions: 6035 single spotted yeast ORF/non-ORF gene probes; 45 probes for rRNA controls and 15 probes for B. subtilis genes as spiked controls. Probes are PCR fragments comprising the whole ORF (5558 cases) or a 1000 bp-fragment from the ORF 3' end (451 cases).
Web link
http://scsie.uv.es/chipsdna Contributor(s)
Pérez-Ortín JE , García-Martínez J Submission date
May 19, 2011
Last update date
Dec 15, 2014
Contact name
Jose E. Perez-Ortin
E-mail(s)
jose.e.perez@uv.es Phone
34 963 543467
Organization name
Universitat de Valencia
Department
Bioquimica y Biologia Molecular
Lab
Yeast Functional Genomics (GFL)
Street address
Dr. Moliner 50
City
Burjassot
State/province
Valencia
ZIP/Postal code
E46100
Country
Spain
Samples (131)
GSM1139880 , GSM1139881 , GSM1139882 , GSM1139883 , GSM1139884 , GSM1139885
GSM1139886 ,
GSM1139887 ,
GSM1139888 ,
GSM1383242 ,
GSM1383243 ,
GSM1383244 ,
GSM1383245 ,
GSM1383246 ,
GSM1383247 ,
GSM1383248 ,
GSM1383249 ,
GSM1383250 ,
GSM1383251 ,
GSM1383252 ,
GSM1383253 ,
GSM1383254 ,
GSM1383255 ,
GSM1383256 ,
GSM1383257 ,
GSM1383258 ,
GSM1383259 ,
GSM1400526 ,
GSM1400527 ,
GSM1400528 ,
GSM1400529 ,
GSM1400530 ,
GSM1400531 ,
GSM1400532 ,
GSM1400533 ,
GSM1400534 ,
GSM1400535 ,
GSM1400536 ,
GSM1400537 ,
GSM1400538 ,
GSM1400539 ,
GSM1400540 ,
GSM1400541 ,
GSM1400542 ,
GSM1400543 ,
GSM1400544 ,
GSM1400545 ,
GSM1400546 ,
GSM1400547 ,
GSM1400548 ,
GSM1400549 ,
GSM1400550 ,
GSM1400551 ,
GSM1400552 ,
GSM1400553 ,
GSM1400554 ,
GSM1400555 ,
GSM1400556 ,
GSM1400557 ,
GSM1400558 ,
GSM1400559 ,
GSM1400560 ,
GSM1400561 ,
GSM1400562 ,
GSM1400563 ,
GSM1400564 ,
GSM1400565 ,
GSM1400566 ,
GSM1400567 ,
GSM1543576 ,
GSM1543577 ,
GSM1543578 ,
GSM1543579 ,
GSM1543580 ,
GSM1543581 ,
GSM1543582 ,
GSM1543583 ,
GSM1543584 ,
GSM1543585 ,
GSM1543586 ,
GSM1543587 ,
GSM1543588 ,
GSM1543589 ,
GSM1543590 ,
GSM1543591 ,
GSM1543592 ,
GSM1543593 ,
GSM1543594 ,
GSM1543595 ,
GSM1543596 ,
GSM1543597 ,
GSM1543598 ,
GSM1543599 ,
GSM1543600 ,
GSM1860938 ,
GSM1860939 ,
GSM1860940 ,
GSM1860941 ,
GSM1860942 ,
GSM1860943 ,
GSM1860944 ,
GSM1860945 ,
GSM1860946 ,
GSM1860947 ,
GSM1860948 ,
GSM1860949 ,
GSM1860950 ,
GSM1860951 ,
GSM1860952 ,
GSM1860953 ,
GSM1860954 ,
GSM1860955 ,
GSM1860956 ,
GSM1860957 ,
GSM2544269 ,
GSM2544270 ,
GSM2544271 ,
GSM2544272 ,
GSM2544273 ,
GSM2544274 ,
GSM3640379 ,
GSM3640380 ,
GSM3640381 ,
GSM3640382 ,
GSM3640383 ,
GSM3640384 ,
GSM3640385 ,
GSM3640386 ,
GSM3640387 ,
GSM3640388 ,
GSM3640389 Series (7)
GSE29519 Genomic Run-On (GRO): determination of the nascent transcriptional rate and mRNA amount in Xrn1 mutants
GSE57467 Genomic Run On (GRO): determination of the nascent transcriptional rates and mRNA levels in several yeast mutants.
GSE58051 Genomic Run On (GRO): determination of the nascent transcriptional rate and mRNA amount during alkaline stress response
GSE63187 Transcriptomic analyses of three wine yeast strains duting their response to nitrogen availability
GSE72356 Determination of transcriptional rates and mRNA levels during osmotic stress in S. cerevisiae wild type and cbc1/sto1 mutant cells using Genomic Run On (GRO)
GSE96803 Transcription rates in S. cerevisiae wild type haploid and polyploid cells as well as in whi5 and cln3 mutant cells using Genomic Run On (GRO)
GSE127875 Transcriptomic analysis of the iron depletion in yeast
Data table header descriptions ID Probe_Length Most cases are the ORF length, except for 451 genes having 1 kb from the 3' end
ORF Locus tag
ORF_Name Systematic ORF name
Gene_Name Standard SGD gene name, if given
Molecular_Function GO
Biological_Process GO
SPOT_ID
Data table ID Probe_Length ORF ORF_Name Gene_Name Molecular_Function Biological_Process SPOT_ID R1 - C1 : 1
25S rDNA
25S rDNA
R1 - C1 : 10
297
YBL091C-A YBL091C-A
SCS22
unknown
unknown
R1 - C1 : 11
195
YCR102W-A YCR102W-A
unknown
unknown
R1 - C1 : 12
258
YDL130W-A YDL130W-A
STF1
unknown
ATP synthesis coupled proton transport
R1 - C1 : 13
356
RPR1 RPR1
RPR1
RNase P RNA component
intronic box C/D snoRNA processing , tRNA processing
R1 - C1 : 14
153
YDR034W-B YDR034W-B
unknown
unknown
R1 - C1 : 15
267
YDR363W-A YDR363W-A
SEM1
unknown
filamentous growth, exocytosis, regulation of cell cycle
R1 - C1 : 16
18S rDNA
18S rDNA
R1 - C1 : 2
237
YDR525W-A YDR525W-A
SNA2
unknown
unknown
R1 - C1 : 3
920
YAL025C YAL025C
MAK16
unknown
ribosomal large subunit biogenesis virus-host interaction
R1 - C1 : 4
1553
YAL022C YAL022C
FUN26
nucleoside transporter nucleoside transport
nucleoside transport
R1 - C1 : 5
282
YER048W-A YER048W-A
unknown
unknown
R1 - C1 : 6
219
YER091C-A YER091C-A
unknown
unknown
R1 - C1 : 7
243
YIR020W-B YIR020W-B
unknown
unknown
R1 - C1 : 8
1421
YKL221W YKL221W
MCH2
NOT a monocarboxylic acid transporter, transporter
transport
R1 - C1 : 9
261
YKL053C-A YKL053C-A
MDM35
unknown
* mitochondrion organization and biogenesis
R1 - C10 : 1
650
YGL037C YGL037C
PNC1
nicotinamidase
chromatin silencing at ribosomal DNA (rDNA), chromatin silencing at telomere, nicotinate nucleotide biosynthesis, salvage pathway
R1 - C10 : 10
832
YNL162W YNL162W
RPL42A
* structural constituent of ribosome
protein biosynthesis
R1 - C10 : 11
306
YDR139C YDR139C
RUB1
* protein tagging
RUB1-dependent protein catabolism
R1 - C10 : 12
647
YDR177W YDR177W
UBC1
ubiquitin conjugating enzyme
* endocytosis, * germination (sensu Saccharomyces), protein monoubiquitination, protein polyubiquitination
6144 581 Kbytes .Supplementary data files not provided
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