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Platform GPL1322 Query DataSets for GPL1322
Status Public on Jul 01, 2004
Title [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Drosophila melanogaster
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

The GeneChip Drosophila Genome 2.0 Array is a microarray tool for studying expression of Drosophila melanogaster transcripts:
- Provides comprehensive coverage of the transcribed Drosophila genome on a single array
- Comprised of 18,880 probe sets, analyzing over 18,500 transcripts

Sequences used in the design of the GeneChip Drosophila Genome 2.0 Array were selected from Flybase version 3.1.
Oligonucleotide probes complementary to each corresponding sequence are synthesized in situ on the arrays. Fourteen pairs of oligonucleotide probes are used to measure the level of transcription of each sequence.

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 08, 2012: annotation table updated with netaffx build 32
July 06, 2016: annotation table updated with netaffx build 35
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=fly-20
http://www.affymetrix.com/analysis/index.affx
Submission date Jul 01, 2004
Last update date May 04, 2018
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (4782) GSM50397, GSM50398, GSM50399, GSM50400, GSM50401, GSM50402 
Series (334)
GSE2623 GFP or spotted-dick RNAi treated S2 cells
GSE2863 wesle-affy-droso-91201
GSE3055 Sex-specific role of Drosophila HP1 in regulating chromatin structure and gene transcription
Relations
Alternative to GPL13770 (Alternative ENSG.CDF V12)

Data table header descriptions
ID Affymetrix Probe Set ID
CLONE_ID_LIST FlyBase Identifiers
SPOT_ID Column added by GEO staff to facilitate sequence tracking in Entrez GEO
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the Sequence Source field to determine the database used.
Species Scientific Name
Annotation Date
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: Accession Number // Description // Evidence. The description corresponds directly to the GO ID. The evidence can be direct, or extended.
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: Accession Number // Description // Evidence. The description corresponds directly to the GO ID. The evidence can be direct, or extended.
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: Accession Number // Description // Evidence. The description corresponds directly to the GO ID. The evidence can be direct, or extended.

Data table
ID CLONE_ID_LIST SPOT_ID Representative Public ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
1616608_a_at FBgn0001128 CG9042-RB Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG9042-RB /FEA=BDGP /GEN=Gpdh /DB_XREF=CG9042 FBgn0001128 /SEG=chr2L:+5935896,5940528 /MAP=26A3-26A3 /LEN=1934 /DEF=(CG9042 gene symbol:Gpdh FBgn0001128 (GO:0005737 cytoplasm) (GO:0006127 glycerophosphate shuttle) (GO:0004367 glycerol-3-phosphate dehydrogenase (NAD+))) Glycerol 3 phosphate dehydrogenase Gpdh 33824 NM_001258973 /// NM_001273182 /// NM_001273183 /// NM_001273184 /// NM_057217 /// NM_057218 /// NM_057219 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006072 // glycerol-3-phosphate metabolic process // inferred from sequence or structural similarity /// 0006127 // glycerophosphate shuttle // non-traceable author statement /// 0006641 // triglyceride metabolic process // inferred from mutant phenotype /// 0006650 // glycerophospholipid metabolic process // inferred from electronic annotation /// 0007629 // flight behavior // inferred from mutant phenotype /// 0046168 // glycerol-3-phosphate catabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005737 // cytoplasm // non-traceable author statement /// 0005811 // lipid particle // inferred from direct assay /// 0009331 // glycerol-3-phosphate dehydrogenase complex // inferred from electronic annotation /// 0030018 // Z disc // inferred from direct assay /// 0031430 // M band // inferred from direct assay 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // inferred from sequence or structural similarity /// 0004367 // glycerol-3-phosphate dehydrogenase [NAD+] activity // non-traceable author statement /// 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016614 // oxidoreductase activity, acting on CH-OH group of donors // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from electronic annotation /// 0036439 // glycerol-3-phosphate dehydrogenase [NADP+] activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // inferred from electronic annotation /// 0047952 // glycerol-3-phosphate dehydrogenase [NAD(P)+] activity // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation /// 0052590 // sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity // inferred from electronic annotation /// 0052591 // sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity // inferred from electronic annotation
1622892_s_at FBgn0035889 FBgn0053057 CG7163-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG7163-RA /FEA=BDGP /GEN=CG7163 /DB_XREF=CG7163 FBgn0035889 /SEG=chr3L:-8361016,8363982 /MAP=66C11-66C11 /LEN=2211 /DEF=(CG7163 gene symbol:CG7163 FBgn0035889 ) CG33057 gene product from transcript CG33057-RA /// monkey king protein CG33057 /// mkg-p 38955 318833 NM_139962 /// NM_168272 /// NM_176299 0006388 // tRNA splicing, via endonucleolytic cleavage and ligation // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0008270 // zinc ion binding // inferred from electronic annotation /// 0008665 // 2'-phosphotransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016779 // nucleotidyltransferase activity // inferred from electronic annotation
1622893_at FBgn0040736 CG16844-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG16844-RA /FEA=BDGP /GEN=CG16844 /DB_XREF=CG16844 FBgn0040736 /SEG=chr2R:+13451839,13452227 /MAP=55C6-55C6 /LEN=317 /DEF=(CG16844 gene symbol:CG16844 FBgn0040736 ) Immune induced molecule 3 IM3 50209 NM_144111 0002376 // immune system process // inferred from electronic annotation /// 0006412 // translation // inferred by curator /// 0006508 // proteolysis // inferred from sequence or structural similarity /// 0006508 // proteolysis // inferred from electronic annotation /// 0006952 // defense response // inferred from direct assay /// 0008063 // Toll signaling pathway // non-traceable author statement /// 0019731 // antibacterial humoral response // inferred from direct assay /// 0045087 // innate immune response // inferred from electronic annotation 0005576 // extracellular region // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005840 // ribosome // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred from direct assay /// 0022627 // cytosolic small ribosomal subunit // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from direct assay /// 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008236 // serine-type peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation
1622894_at FBgn0034454 CG15120-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG15120-RA /FEA=BDGP /GEN=CG15120 /DB_XREF=CG15120 FBgn0034454 /SEG=chr2R:+14561473,14564093 /MAP=56D13-56D14 /LEN=1069 /DEF=(CG15120 gene symbol:CG15120 FBgn0034454 ) CG15120 gene product from transcript CG15120-RA CG15120 37248 NM_137584 0005488 // binding // inferred from electronic annotation
1622895_at FBgn0052075 CG32075-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG32075-RA /FEA=BDGP /GEN=CG32075 /DB_XREF=CG32075 FBgn0052075 /SEG=chr3L:-11020252,11022469 /MAP=68A3-68A4 /LEN=1956 /DEF=(CG32075 gene symbol:CG32075 synonyms:(CG6316) FBgn0052075 ) CG32075 gene product from transcript CG32075-RA CG32075 326192 NM_001259783 /// NM_140171 0022008 // neurogenesis // inferred from mutant phenotype
1622896_at FBgn0038966 CG13848-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG13848-RA /FEA=BDGP /GEN=CG13848 /DB_XREF=CG13848 FBgn0038966 /SEG=chr3R:-18239990,18241411 /MAP=94A12-94A13 /LEN=1148 /DEF=(CG13848 gene symbol:CG13848 FBgn0038966 (GO:0008431 tocopherol binding)) prolonged depolarization afterpotential (PDA) is not apparent pinta 42635 NM_142785 0007602 // phototransduction // inferred from mutant phenotype /// 0016063 // rhodopsin biosynthetic process // inferred from mutant phenotype 0005501 // retinoid binding // inferred from direct assay /// 0008431 // vitamin E binding // inferred from sequence or structural similarity
1622897_at FBgn0000606 CG2328-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG2328-RA /FEA=BDGP /GEN=eve /DB_XREF=CG2328 FBgn0000606 /SEG=chr2R:+5038223,5041412 /MAP=46C10-46C10 /LEN=3118 /DEF=(CG2328 gene symbol:eve FBgn0000606 (GO:0007507 heart development) (GO:0007517 muscle development) (GO:0003704 specific RNA polymerase II transcription factor) (GO:0008595 determination of anteriorposterior axis, embryo) (GO:0007366 periodic partitioning by pair rule gene) (GO:0045165 cell fate commitment) (GO:0007350 blastoderm segmentation) (GO:0005634 nucleus) (GO:0007399 neurogenesis)) even skipped eve 36039 NM_078946 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0001709 // cell fate determination // non-traceable author statement /// 0003007 // heart morphogenesis // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007350 // blastoderm segmentation // traceable author statement /// 0007366 // periodic partitioning by pair rule gene // non-traceable author statement /// 0007366 // periodic partitioning by pair rule gene // traceable author statement /// 0007376 // cephalic furrow formation // inferred from mutant phenotype /// 0007377 // germ-band extension // inferred from mutant phenotype /// 0007377 // germ-band extension // traceable author statement /// 0007399 // nervous system development // non-traceable author statement /// 0007417 // central nervous system development // non-traceable author statement /// 0007507 // heart development // non-traceable author statement /// 0007512 // adult heart development // inferred from mutant phenotype /// 0007517 // muscle organ development // traceable author statement /// 0008045 // motor neuron axon guidance // inferred from mutant phenotype /// 0008595 // anterior/posterior axis specification, embryo // non-traceable author statement /// 0009997 // negative regulation of cardioblast cell fate specification // inferred from mutant phenotype /// 0035289 // posterior head segmentation // traceable author statement /// 0035290 // trunk segmentation // traceable author statement /// 0045165 // cell fate commitment // non-traceable author statement /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from expression pattern /// 0050770 // regulation of axonogenesis // inferred from mutant phenotype /// 1901739 // regulation of myoblast fusion // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author statement 0000980 // RNA polymerase II distal enhancer sequence-specific DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0003705 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation
1622898_a_at FBgn0038307 CG4247-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG4247-RA /FEA=BDGP /GEN=mRpS10 /DB_XREF=CG4247 FBgn0038307 /SEG=chr3R:+11055406,11056256 /MAP=88E3-88E3 /LEN=721 /DEF=(CG4247 gene symbol:mRpS10 FBgn0038307 (GO:0005763 mitochondrial small ribosomal subunit) (GO:0006412 protein biosynthesis) (GO:0003735 structural constituent of ribosome)) CG34316 gene product from transcript CG34316-RA /// mitochondrial ribosomal protein S10 CG34316 /// mRpS10 41838 5740757 NM_001104328 /// NM_079631 /// NM_169624 0006412 // translation // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from sequence or structural similarity /// 0005763 // mitochondrial small ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribosome // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
1622899_at FBgn0025807 CG3945-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG3945-RA /FEA=BDGP /GEN=Rad9 /DB_XREF=CG3945 FBgn0025807 /SEG=chr3L:-18818922,18821422 /MAP=75E2-75E3 /LEN=1770 /DEF=(CG3945 gene symbol:Rad9 FBgn0025807 (GO:0006281 DNA repair)) CG3945 gene product from transcript CG3945-RA Rad9 40054 NM_001104169 /// NM_140809 0000075 // cell cycle checkpoint // inferred from electronic annotation /// 0000077 // DNA damage checkpoint // inferred from electronic annotation /// 0006281 // DNA repair // inferred from electronic annotation /// 0006281 // DNA repair // non-traceable author statement 0005634 // nucleus // inferred from direct assay /// 0030896 // checkpoint clamp complex // inferred from direct assay /// 0031965 // nuclear membrane // inferred from direct assay
1622900_at FBgn0041236 CG30330-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG30330-RA /FEA=BDGP /GEN=Gr59d /DB_XREF=CG30330 FBgn0041236 /SEG=chr2R:-18147508,18148737 /MAP=59C4-59C4 /LEN=1167 /DEF=(CG30330 gene symbol:Gr59d synonyms:(CG13543) FBgn0041236 (GO:0007607 taste) (GO:0008527 taste receptor)) Gustatory receptor 59d Gr59d 117343 NM_137914 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from electronic annotation /// 0050909 // sensory perception of taste // inferred from sequence or structural similarity /// 0050912 // detection of chemical stimulus involved in sensory perception of taste // inferred from sequence or structural similarity /// 0050912 // detection of chemical stimulus involved in sensory perception of taste // non-traceable author statement 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0008527 // taste receptor activity // inferred from sequence or structural similarity
1622901_at FBgn0034553 CG9993-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG9993-RA /FEA=BDGP /GEN=CG9993 /DB_XREF=CG9993 FBgn0034553 /SEG=chr2R:-15893689,15895665 /MAP=57B3-57B3 /LEN=1798 /DEF=(CG9993 gene symbol:CG9993 FBgn0034553 (GO:0005324 long-chain fatty acid transporter)) CG9993 gene product from transcript CG9993-RA CG9993 37358 NM_137674 0008152 // metabolic process // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0016207 // 4-coumarate-CoA ligase activity // inferred from sequence or structural similarity /// 0016874 // ligase activity // inferred from electronic annotation
1622902_at FBgn0011283 CG6641-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG6641-RA /FEA=BDGP /GEN=Pbprp5 /DB_XREF=CG6641 FBgn0011283 /SEG=chr2L:-7489097,7489591 /MAP=28A2-28A2 /LEN=494 /DEF=(CG6641 gene symbol:Pbprp5 FBgn0011283 (GO:0005576 extracellular) (GO:0008145 phenylalkylamine binding) (GO:0005550 pheromone binding)) Odorant-binding protein 28a Obp28a 34031 NM_078781 0007606 // sensory perception of chemical stimulus // not recorded /// 0007606 // sensory perception of chemical stimulus // inferred from sequence or structural similarity 0005576 // extracellular region // not recorded /// 0005576 // extracellular region // non-traceable author statement 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural similarity /// 0005550 // pheromone binding // inferred from sequence or structural similarity /// 0005550 // pheromone binding // non-traceable author statement /// 0008145 // phenylalkylamine binding // non-traceable author statement
1622903_s_at FBgn0030330 CG1841-RB Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG1841-RB /FEA=BDGP /GEN=CG1841 /DB_XREF=CG1841 FBgn0030330 /SEG=chrX:+11454726,11458350 /MAP=10D8-10D8 /LEN=3261 /DEF=(CG1841 gene symbol:CG1841 FBgn0030330 ) Transport and Golgi organization 10 Tango10 32125 NM_001272532 /// NM_132515 /// NM_167302 0007517 // muscle organ development // inferred from mutant phenotype /// 0009306 // protein secretion // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // inferred from mutant phenotype 0005829 // cytosol // inferred from direct assay 0005515 // protein binding // inferred from electronic annotation
1622904_at CG5747-RA CG5747-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG5747-RA /FEA=BDGP /GEN=CG5747 /DB_XREF=CG5747 FBgn0035935 /SEG=chr3L:-8861601,8870758 /MAP=66E3-66E3 /LEN=5349 /DEF=(CG5747 gene symbol:CG5747 FBgn0035935 ) misfire mfr 39016 NM_001144443 /// NM_001144444 /// NM_001144445 /// NM_001144446 /// NM_001144447 /// NM_001144448 /// NM_001144449 0007283 // spermatogenesis // inferred from mutant phenotype /// 0009566 // fertilization // inferred from mutant phenotype /// 0009790 // embryo development // inferred from mutant phenotype /// 0030381 // chorion-containing eggshell pattern formation // inferred from mutant phenotype /// 0035045 // sperm plasma membrane disassembly // inferred from mutant phenotype 0005515 // protein binding // inferred from electronic annotation
1622905_at S.C3L002615 S.C3L002615 Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase S.C3L002615 /FEA=fgenesh /SEG=chr3L:-20567855,20576519
1622906_at CG13200-RA CG13200-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG13200-RA /FEA=BDGP /GEN=CG13200 /DB_XREF=CG13200 FBgn0033630 /SEG=chr2R:-6445249,6445922 /MAP=47F7-47F7 /LEN=673 /DEF=(CG13200 gene symbol:CG13200 FBgn0033630 ) Superoxide dismutase 3 Sod3 36232 NM_001038850 /// NM_001043071 /// NM_136838 /// NM_165829 0006801 // superoxide metabolic process // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0009650 // UV protection // inferred from direct assay /// 0019430 // removal of superoxide radicals // not recorded /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0005615 // extracellular space // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // /// 0005739 // mitochondrion // not recorded /// 0005829 // cytosol // not recorded 0004784 // superoxide dismutase activity // inferred from direct assay /// 0004784 // superoxide dismutase activity // inferred from sequence or structural similarity /// 0005507 // copper ion binding // not recorded /// 0008270 // zinc ion binding // not recorded /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
1622907_at FBgn0034350 FBgn0050120 CG5189-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG5189-RA /FEA=BDGP /GEN=CG5189 /DB_XREF=CG5189 FBgn0034350 /SEG=chr2R:+13510289,13511076 /MAP=55C9-55C9 /LEN=662 /DEF=(CG5189 gene symbol:CG5189 FBgn0034350 (GO:0005794 Golgi apparatus)) CG30120 gene product from transcript CG30120-RB /// CG5189 gene product from transcript CG5189-RB CG30120 /// CG5189 37122 246467 NM_001144227 /// NM_137490 /// NM_166290 0016049 // cell growth // inferred from sequence or structural similarity /// 0032008 // positive regulation of TOR signaling // inferred from mutant phenotype /// 0034613 // cellular protein localization // inferred from sequence or structural similarity /// 0043547 // positive regulation of GTPase activity // inferred from sequence or structural similarity /// 0071230 // cellular response to amino acid stimulus // inferred from mutant phenotype 0005794 // Golgi apparatus // non-traceable author statement /// 0071986 // Ragulator complex // inferred from sequence or structural similarity 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0032947 // protein complex scaffold // inferred from sequence or structural similarity
1622908_a_at FBgn0030073 CG10962-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG10962-RA /FEA=BDGP /GEN=CG10962 /DB_XREF=CG10962 FBgn0030073 /SEG=chrX:-8711897,8787971 /MAP=8C1-8C4 /LEN=1360 /DEF=(CG10962 gene symbol:CG10962 synonyms:(CG7090) FBgn0030073 (GO:0016616 oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor)) CG10962 gene product from transcript CG10962-RB /// ncRNA CG10962 /// CR43836 31824 14462390 NM_176714 /// NR_073641 /// NR_073642 /// NR_073643 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation-reduction process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016616 // oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor // inferred from sequence or structural similarity
1622909_at FBgn0020622 CG2699-RA Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase CG2699-RA /FEA=BDGP /GEN=Pi3K21B /DB_XREF=CG2699 FBgn0020622 /SEG=chr2L:+297881,303955 /MAP=21B8-21B8 /LEN=3338 /DEF=(CG2699 gene symbol:Pi3K21B FBgn0020622 (GO:0005942 1-phosphatidylinositol 3-kinase complex) (GO:0008286 insulin receptor signaling pathway) (GO:0046620 regulation of organ size) (GO:0016303 phosphatidylinositol 3-kinase)) CG2699 gene product from transcript CG2699-RE Pi3K21B 33203 NM_001272886 /// NM_001272887 /// NM_001272888 /// NM_057922 0006468 // protein phosphorylation // inferred from direct assay /// 0008286 // insulin receptor signaling pathway // traceable author statement /// 0008361 // regulation of cell size // inferred from mutant phenotype /// 0016310 // phosphorylation // inferred from electronic annotation /// 0042127 // regulation of cell proliferation // inferred from mutant phenotype /// 0043551 // regulation of phosphatidylinositol 3-kinase activity // inferred from electronic annotation /// 0043551 // regulation of phosphatidylinositol 3-kinase activity // inferred from sequence or structural similarity /// 0043551 // regulation of phosphatidylinositol 3-kinase activity // inferred from physical interaction /// 0045793 // positive regulation of cell size // traceable author statement /// 0045927 // positive regulation of growth // traceable author statement /// 0046620 // regulation of organ growth // non-traceable author statement /// 0046834 // lipid phosphorylation // inferred from direct assay /// 0046854 // phosphatidylinositol phosphorylation // inferred from direct assay 0005829 // cytosol // traceable author statement /// 0005942 // phosphatidylinositol 3-kinase complex // inferred from electronic annotation /// 0005942 // phosphatidylinositol 3-kinase complex // non-traceable author statement /// 0005943 // 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex // non-traceable author statement 0005515 // protein binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0019900 // kinase binding // inferred from physical interaction /// 0035014 // phosphatidylinositol 3-kinase regulator activity // inferred from sequence or structural similarity /// 0035014 // phosphatidylinositol 3-kinase regulator activity // non-traceable author statement /// 0043560 // insulin receptor substrate binding // inferred from sequence or structural similarity
1622910_at Dm.3R.39558.0 Dm.3R.39558.0 Drosophila melanogaster Oct 6, 2014 Consensus sequence Flybase Stencil:3R:22177137:22178419:GENSCAN /FEA=stencil /SEG=chr3R:+22177137,22178419

Total number of rows: 18952

Table truncated, full table size 16672 Kbytes.






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