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Platform GPL13161 Query DataSets for GPL13161
Status Public on May 02, 2012
Title NimbleGen custom Mouse Top2β target gene tiling array (HD 2.1)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol see manufacturer's website
 
Description Genomic regions of potential Top2β target genes from mm9, isothermal tiling oligos at 100bp
 
Submission date Feb 11, 2011
Last update date Nov 20, 2015
Contact name Dirk Schuebeler
Organization name Friedrich Miescher Institute for Biomedical Research
Street address Maulbeerstrasse 66
City Basel
ZIP/Postal code 4058
Country Switzerland
 
Samples (7) GSM673669, GSM673670, GSM1119094, GSM1119095, GSM1947731, GSM1947732 
Series (6)
GSE27246 Top2β ChIP-chip
GSE27247 Topoisomerase IIbeta occupies H3K4 methylated sites and regulates neuronal survival via repression of the neurotrophin receptor p75
GSE45890 Gene regulation and priming by Topoisomerase IIα in embryonic stem cells [ChIP-chip]

Data table header descriptions
ID probe id
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_GB GenBank Accession number
RANGE_START Chromosomal start position of oligo

Data table
ID SEQUENCE Chromosome RANGE_GB RANGE_START
CHR01FS003043894 GGCGCGCTGTCTCTGCAGCATAGGGGCACTAACTATGCCCCTAACCAAGA chr1 NC_000067.5 3043894
CHR01FS003044249 TAGAAGTAGACATCTGTGTCCTCACATTGGGTGAAGATGTCGCCTGGGGC chr1 NC_000067.5 3044249
CHR01FS003090498 ATAAGGAACACCAGCCATTTATATCGCAACTTCTAATTACACAGACATTTCATTTTCC chr1 NC_000067.5 3090498
CHR01FS003090598 CATTCTCATTAAATAATTCCATTTTATAGTAGTTGGCCTACACGGTTTCTTTGT chr1 NC_000067.5 3090598
CHR01FS003090718 TAAACAAAATGGAACTTTTCTCTGAATGTCAAAACTCTGGTAATGTCTTAAGGCCA chr1 NC_000067.5 3090718
CHR01FS003090798 GTTTTTCTGGAAGATGTGTAGTAGGCTACAACAGAGTTGGCCCTGCCCCG chr1 NC_000067.5 3090798
CHR01FS003090918 TCTCTTCCAAAGTAATAAGCCATAAAAAAATCAGAGCACTTTCTAATATGCTTCTGGT chr1 NC_000067.5 3090918
CHR01FS003091008 TGTCAAGTTACACCCAGTGATCACTCTTTGTTTGAAACATCACAGGCAACAGCACATTTAAA chr1 NC_000067.5 3091008
CHR01FS003091098 TCTGAGGAGAGTGGCTCATAATCCTCACATTGTCATTTATTTCCTTGCTGC chr1 NC_000067.5 3091098
CHR01FS003091218 TCCCCTTTTCTCTGTGTGGTTAGTGTGTGTAATAGTTCCCTGGAAAAACAGATA chr1 NC_000067.5 3091218
CHR01FS003091313 ATCTCAGCAATAAACAGCTGGGGTGCTCATGAGAACTGGCTATTTTAATAATCATACCTACAT chr1 NC_000067.5 3091313
CHR01FS003091403 TGTGGTCTAGCTTATGTCCTCTATTGCTAAAGCATCAGGGTAATCAAAGCCAAAGAT chr1 NC_000067.5 3091403
CHR01FS003091518 CCTAGAATGCACTACTGTGTCAGTAGCAATAGCTGAAAATAGGTTTTGGAATTTCACC chr1 NC_000067.5 3091518
CHR01FS003091618 ACAGAATATTATTTTGACTAGCAAAGTTTATGCCCTTAGGAATGGATGATATTTGATAC chr1 NC_000067.5 3091618
CHR01FS003091718 ACCCAAATCTCTATTTAATTCAACCTTTGAAATCAGTCTCATAATGTGGTTTGGG chr1 NC_000067.5 3091718
CHR01FS003091818 CCTGCTCTTGATAAACAGACCTTAATCTCTATTTGGCTCCCACTGGATATGAT chr1 NC_000067.5 3091818
CHR01FS003091908 TAGTGGACATCACATAGTTCTTATAGAACTATGAAGAACAAATGGGGACATCACATAGAGCAGA chr1 NC_000067.5 3091908
CHR01FS003092018 ACAAAGAGCTTCTATTTTTCTGACAAGCTAAACTCAAATGACTCAAGTCAAGTTTCT chr1 NC_000067.5 3092018
CHR01FS003092143 AAGATTAGCATGGGCCCTGCACAAGGATGACACACAAAATATAAATATTGAGTAACAAAA chr1 NC_000067.5 3092143
CHR01FS003092223 ATTAATTAGGGCTTGCCTCATGTTAAAGTCAGCAACTCCAAGGCTTAGTTTTCACTG chr1 NC_000067.5 3092223

Total number of rows: 2079060

Table truncated, full table size 198747 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL13161_080430_MM9_Roloff_DNAMeth_HX1.annot.txt.gz 1.9 Mb (ftp)(http) TXT
GPL13161_080430_MM9_Roloff_DNAMeth_HX1.annot_850u_50d.coord.txt.gz 320.4 Kb (ftp)(http) TXT
GPL13161_080430_MM9_Roloff_DNAMeth_HX1.ngd.gz 1.9 Mb (ftp)(http) NGD
GPL13161_080430_MM9_Roloff_DNAMeth_HX1.pos.gz 17.1 Mb (ftp)(http) POS

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