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Platform GPL10994 Query DataSets for GPL10994
Status Public on Oct 05, 2010
Title NimbleGen Mus musculus MM9 Expression Array (12x135k)_ALL PROBES
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Catalog number 05543797001
 
Description This is a whole mus musculus genome array in 12-plex format provided by nimblegen.
Here we consider all the probes of the array separately (132489 ID). Alternative Platform GPL10192 represents only the ID for the GenBank Accession Number (44170 ID).

Design name: 090901_MM9_EXP_HX12.
Format: 12x135K
Source: NCBI
Build: MM9
Probe Length: 60mer
Genes: 44,170
Probes/ Target: 3
Replicates: 1
NimbleGen description file(s) linked below:
GPL10994_090901_MM9_EXP.ndf
GPL10994_090901_MM9_EXP_ALL_PROBES.ngd
 
Submission date Sep 29, 2010
Last update date Oct 05, 2010
Contact name Laurent Journot
E-mail(s) mgx@igf.cnrs.fr
URL http://www.mgx.cnrs.fr/
Organization name MGX - Montpellier GenomiX
Lab Institut de Génomique Fonctionnelle (IGF)
Street address 141 rue de la Cardonille
City Montpellier
ZIP/Postal code 34094 - Cedex 05
Country France
 
Samples (57) GSM605714, GSM605715, GSM605716, GSM605717, GSM605718, GSM605719 
Series (6)
GSE24575 beta-arrestin-2 deficiency effect on intestinal tumorigenesis in Apc-mutated mice
GSE24576 Gene expression analysis of tumors from ApcD14/+ mice
GSE24577 Impact of beta-arrestin-2 deficiency on intestinal tumorigenesis in Apc-mutated mice
Relations
Alternative to GPL10192

Data table header descriptions
ID
GB_ACC GenBank Accession number
CHROMOSOME
RANGE_GB Chromosome Accession.version
SPOT_ID
START
STOP

Data table
ID GB_ACC CHROMOSOME RANGE_GB SPOT_ID START STOP
AB000096P02355 AB000096 chr6 NC_000072.5 88143884 88157023
AB000096P02849 AB000096 chr6 NC_000072.5 88143884 88157023
AB000096P02877 AB000096 chr6 NC_000072.5 88143884 88157023
AB000490P02127 AB000490 chr2 NC_000068.6 38548179 38567754
AB000490P02759 AB000490 chr2 NC_000068.6 38548179 38567754
AB000490P02535 AB000490 chr2 NC_000068.6 38548179 38567754
AB001425P00054 AB001425 chr2 NC_000068.6 120490678 120504039
AB001425P00236 AB001425 chr2 NC_000068.6 120490678 120504039
AB001425P00380 AB001425 chr2 NC_000068.6 120490678 120504039
AB001435P00162 AB001435 chr7 NC_000073.5 86855740 86858774
AB001435P00406 AB001435 chr7 NC_000073.5 86855740 86858774
AB001435P00024 AB001435 chr7 NC_000073.5 86855740 86858774
AB001539P01455 AB001539 chr7 NC_000073.5 53080599 53086314
AB001539P00497 AB001539 chr7 NC_000073.5 53080599 53086314
AB001539P01447 AB001539 chr7 NC_000073.5 53080599 53086314
AB001750P03079 AB001750 chr11 NC_000077.5 70658426 70754442
AB001750P01680 AB001750 chr11 NC_000077.5 70658426 70754442
AB001750P02618 AB001750 chr11 NC_000077.5 70658426 70754442
AB001926P02510 AB001926 chr3 NC_000069.5 40564696 40594287
AB001926P01533 AB001926 chr3 NC_000069.5 40564696 40594287

Total number of rows: 132489

Table truncated, full table size 7983 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10994_090901_MM9_EXP.ndf.gz 8.3 Mb (ftp)(http) NDF
GPL10994_090901_MM9_EXP_ALL_PROBES.ngd.gz 3.0 Mb (ftp)(http) NGD

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