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Platform GPL10838 Query DataSets for GPL10838
Status Public on Aug 18, 2011
Title [4dehalosa520666F] Affymetrix Dehalococcoides genus 4.8K array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Dehalococcoides mccartyi BAV1; Dehalococcoides mccartyi 195; Dehalococcoides mccartyi CBDB1; Dehalococcoides mccartyi VS
Manufacturer Affymetrix
Manufacture protocol Affymetrix Prokaryotic Sample and Array Processing protocol; 100 Format (Midi)
Description A microarray targeting genes from all available sequenced genomes of the Dehalococcoides genus was designed with 4305 probe sets to target 98.6% of all genes from strains 195, CBDB1, BAV1, and VS.
Contributor(s) Lee PK, Cheng D, Hu P, West KA, Dick GJ, Brodie EL, Andersen GL, Zinder SH, He J, Alvarez-Cohen L
Submission date Aug 19, 2010
Last update date Nov 29, 2012
Contact name Patrick Lee
Organization name University of California, Berkeley
Department Civil and Environmental Engineering
Street address 209 O'Brien Hall
City Berkeley
State/province CA
ZIP/Postal code 94720
Country USA
Samples (93) GSM585159, GSM585160, GSM585161, GSM585162, GSM585163, GSM585164 
Series (7)
GSE23707 The design and validation of a Dehalococcoides genus microarray and its application to two newly isolated Dehalococcoides strains for comparative genomics
GSE27611 Isolation of two new Dehalococcoides mccartyi strains with dissimilar dechlorination functions and their characterization by comparative genomics via microarray analysis
GSE33530 Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions

Data table header descriptions
ORF Locus Tag

Data table
ID CrosshybGenes ORF SPOT_ID
AFFX-BioB-5_at --AFFX-BioB-5_at
AFFX-BioB-M_at --AFFX-BioB-M_at
AFFX-BioB-3_at --AFFX-BioB-3_at
AFFX-BioC-5_at --AFFX-BioC-5_at
AFFX-BioC-3_at --AFFX-BioC-3_at
AFFX-BioDn-5_at --AFFX-BioDn-5_at
AFFX-BioDn-3_at --AFFX-BioDn-3_at
AFFX-CreX-5_at --AFFX-CreX-5_at
AFFX-CreX-3_at --AFFX-CreX-3_at
AFFX-DapX-5_at --AFFX-DapX-5_at
AFFX-DapX-M_at --AFFX-DapX-M_at
AFFX-DapX-3_at --AFFX-DapX-3_at
AFFX-LysX-5_at --AFFX-LysX-5_at
AFFX-LysX-M_at --AFFX-LysX-M_at
AFFX-LysX-3_at --AFFX-LysX-3_at
AFFX-PheX-5_at --AFFX-PheX-5_at
AFFX-PheX-M_at --AFFX-PheX-M_at
AFFX-PheX-3_at --AFFX-PheX-3_at
AFFX-ThrX-5_at --AFFX-ThrX-5_at
AFFX-ThrX-M_at --AFFX-ThrX-M_at

Total number of rows: 4789

Table truncated, full table size 186 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10838_4dehalosa520666F.CDF.gz 1.4 Mb (ftp)(http) CDF

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