NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL10739 Query DataSets for GPL10739
Status Public on Jul 28, 2010
Title [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [probe set (exon) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Thu Jan 21 16:38:27 2010 PST
#%chip_type=HuGene-1_0-st-v1
#%lib_set_name=HuGene-1_0-st
#%lib_set_version=v1
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=GRCh37
#%genome-version-create_date=2009-02-00
#%netaffx-annotation-date=2009-11-23
#%netaffx-annotation-netaffx-build=30.1
 
Submission date Jul 28, 2010
Last update date Jan 25, 2019
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (664) GSM572410, GSM572411, GSM572412, GSM572413, GSM572414, GSM572415 
Series (57)
GSE23321 Expression data from human naïve (TN), stem cell memory (TSCM), central memory (TCM) and effector memory (TEM) CD8+ T cells
GSE26747 Gene expression analysis of dendritic cells from normal or tumor sections of human prostates
GSE30040 Expression data from feline liver tissue

Data table header descriptions
ID probe set ID
GB_LIST GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID genomic location of the corresponding transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome number
RANGE_GB NCBI RefSeq for chromosome of current build
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP stop (integer). Coordinates are standard 1-based (length=stop-start+1).
probe_count Total number of probes in the probe set.
transcript_cluster_id Unique identifier for the transcript cluster containing the probe set.
exon_id Unique identifier for the exon cluster containing the probe set.
psr_id Unique identifier for the probe selection region containing the probe set.
gene_assignment Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes.
mrna_assignment Public mRNAs that should be detected by this probe set based on sequence alignment determined at the time of the current NetAffx annotation update.
probeset_type Array design category of the probe set.

Data table
ID GB_LIST SPOT_ID seqname RANGE_GB RANGE_STRAND RANGE_START RANGE_STOP probe_count transcript_cluster_id exon_id psr_id gene_assignment mrna_assignment probeset_type
7892501 control 4 --- // pos_control // --- // --- // --- // --- normgene->exon
7892502 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892503 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892504 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892505 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892506 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892507 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892508 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892509 control 4 --- // pos_control // --- // --- // --- // --- normgene->exon
7892510 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892511 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892512 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892513 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892514 control 4 --- // pos_control // --- // --- // --- // --- normgene->exon
7892515 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892516 control 4 --- // pos_control // --- // --- // --- // --- normgene->exon
7892517 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892518 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892519 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron
7892520 control 4 --- // neg_control // --- // --- // --- // --- normgene->intron

Total number of rows: 257430

Table truncated, full table size 164168 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap