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Status
Public on Jul 14, 2010
Title
080814_HG18_Deluxe_Promoter_HX1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
NimbleGen
Manufacture protocol
see manufacturer's site: www.nimblegen.com
Description
Platform annotations are based on build HG18, NCBI 36
Submission date
Jul 12, 2010
Last update date
Jul 14, 2010
Contact name
Deepak Mav
Organization name
Sciome LLC
Street address
2 Davis Drive
City
Research Triangle Park
State/province
NC
ZIP/Postal code
27709
Country
USA
Samples (43)
GSM565259 , GSM565260 , GSM565261 , GSM565262 , GSM612814 , GSM612815
GSM612816 ,
GSM612817 ,
GSM612818 ,
GSM612819 ,
GSM612820 ,
GSM612821 ,
GSM612822 ,
GSM612823 ,
GSM612824 ,
GSM612825 ,
GSM612826 ,
GSM612827 ,
GSM612828 ,
GSM612829 ,
GSM612830 ,
GSM612831 ,
GSM612832 ,
GSM612833 ,
GSM612834 ,
GSM612835 ,
GSM612836 ,
GSM612837 ,
GSM612838 ,
GSM612839 ,
GSM612840 ,
GSM612841 ,
GSM612842 ,
GSM612843 ,
GSM612844 ,
GSM612845 ,
GSM737207 ,
GSM737208 ,
GSM737209 ,
GSM1090961 ,
GSM1090962 ,
GSM1090963 ,
GSM1090964 Series (6)
GSE22884 DNA methylation prevents CTCF-mediated silencing of the oncogene BCL6 in B cell lymphomas
GSE24918 B lymphocyte activation induces DNA methylation reprogramming and establishes a common epigenetic signature in memory B and plasma cell compartments [DNA methylation profiling]
GSE24919 B lymphocyte activation induces DNA methylation reprogramming and establishes a common epigenetic signature in memory B and plasma cell compartments
GSE29734 The RPB2 flap loop of human RNA polymerase II is dispensable for transcription initiation and elongation.
GSE44773 DamID for MBD3 in human breast cancer cell lines [Promoter_Arrays]
GSE44776 DamID for MBD3 in human breast cancer cell lines
Data table header descriptions ID PROBE_ID Nimblegen probe identifier
SEQUENCE Sequence of oligo
CHROMOSOME Chromosomal location
RANGE_GB SPOT_ID RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo
Data table ID PROBE_ID SEQUENCE CHROMOSOME RANGE_GB SPOT_ID RANGE_START LENGTH RANGE_END 8076_1_1
CHR01FS158402936
CTTTAGGTGTGCCTGACCCTCACAGCCAAGCGCATGGCGCGGAAGAACTG
chr1
NC_000001.9
158402936
50
158402985
8076_1_3
CHR14FS062580333
TATTTGATATTTCAGTGTACCTCTGTCTTTCCCTGTGCCTCCAACTAGGCAA
chr14
NC_000014.7
62580333
52
62580384
8076_1_5
CHR17FS073974953
GCTAGATAAGGACCTCCCTTGTAATGGGTCTCAGCCTCCCAGCTGCTCTT
chr17
NC_000017.9
73974953
50
73975002
8076_1_7
CHR02FS220017956
CACAGGCAACCGGGGCCGGGCCACGGCACCTGGGGGTGGAGCCGCTGGTG
chr2
NC_000002.10
220017956
50
220018005
8076_1_9
CHRXFS071732206
TTACTTGAGTAGACATTTCACCAAAGATGATATACAAATAGCCACCACACACATGTAAAGATGC
chrX
NC_000023.9
71732206
64
71732269
8076_1_11
CHR11FS111538111
AGTTTAAATGGCCTAGTTTGAAAAGGAGAATTGAGTTGAATCTCAAAGAATGCTTA
chr11
NC_000011.8
111538111
56
111538166
8076_1_13
CHR11FS001951495
AAGGGAACCGGGATGCCATGTTCTAACGCCCGTGTGTTTCCACACATGGC
chr11
NC_000011.8
1951495
50
1951544
8076_1_15
CHRYFS057768521
CTCTTCTGGGTTTCACCTTTGTAGCAGGATCCCTGCAGATCAGGCCCATG
chrY
NC_000024.8
57768521
50
57768570
8076_1_17
CHR12FS050005310
TAGCTTGAGATTAGGACACTAGGTGTGGAGGAACCACGTACTCAGATTTTA
chr12
NC_000012.10
50005310
51
50005360
8076_1_19
CHR03FS186352409
TTGGTTCTAGCTTTTATAAATTGGTTTAAGACTATTAAGCTTACTTTCACTCAT
chr3
NC_000003.10
186352409
54
186352462
8076_1_21
CHR10FS085947394
CCAGGGATCTATTGGCACGCCCAGACCTCCTCTGATGGGTGCGTGGGGCA
chr10
NC_000010.9
85947394
50
85947443
8076_1_23
CHR06FS047550733
TAACTAATATTTGCATAGCATTCAAAAGTTTAGAAGGTATTTTTACATACCATTT
chr6
NC_000006.10
47550733
55
47550787
8076_1_25
CHR08FS056950328
GAAACAACGGCTAGCTTGGTGGCTCTGAGAGGTCTCTATTCACATCAATA
chr8
NC_000008.9
56950328
50
56950377
8076_1_27
CHR07FS100323567
CCCCGCAGTAATTCATGTCCCTGTCCGTGTTGTACTCCCCCCAGGTTTGA
chr7
NC_000007.12
100323567
50
100323616
8076_1_29
CHR06FS147870073
AAACACACAGCAGGTCGAGAAACGACTCTGAAATCACTCCTTGTCCACTT
chr6
NC_000006.10
147870073
50
147870122
8076_1_31
CHR10FS007706093
TGAAAAAATTTCCCAAGAGAGACTATGTGTGAAAACAAGTACAACTACCTCACCCA
chr10
NC_000010.9
7706093
56
7706148
8076_1_33
CHRXFS100018137
ACTGCGCTCAGCCATTTTTGAAAAGTACTTTCAAAAATATACTTTCTTCGCTGATCTA
chrX
NC_000023.9
100018137
58
100018194
8076_1_35
CHR05FS150306396
GCCTACTACACGAGCAGTAAGGTCCACACTTTTGCAGACAGATTTCACAG
chr5
NC_000005.8
150306396
50
150306445
8076_1_37
CHR01FS035024481
GACTTGGGTGGATGCGCTGATAGAACATCCTCAAGACAGTTTCCTTGAAA
chr1
NC_000001.9
35024481
50
35024530
8076_1_39
CHR12FS090099463
CTACTCCACTGAAGCTAGTTGCCATAGTTTACAAATGTTTTACCAAAAATAATAA
chr12
NC_000012.10
90099463
55
90099517
2173622 264086 Kbytes .Supplementary file Size Download File type/resource GPL10671_080814_HG18_Deluxe_Promoter_HX1.ndf.gz
139.4 Mb
(ftp) (http) NDF
GPL10671_080814_HG18_Deluxe_Promoter_HX1.pos.gz
17.7 Mb
(ftp) (http) POS
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