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Platform GPL10379 Query DataSets for GPL10379
Status Public on May 05, 2010
Title Rosetta/Merck Human RSTA Custom Affymetrix 2.0 microarray [HuRSTA-2a520709]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer website.
 
Description Contains probesets for each transcript. Probeset is made of 4 to 20 distinct probes.
 
Web link http://www.rii.com
Contributor(s) Kulkarni A, Castle J
Submission date May 03, 2010
Last update date Jul 09, 2014
Contact name Amit V Kulkarni
E-mail amit_kulkarni@merck.com
Phone 206-802-7352
Organization name Rosetta Inpharmatics / Merck Pharmaceuticals
Department Genomics
Lab Array Design
Street address 401 Terry Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Samples (2879) GSM552132, GSM552133, GSM552134, GSM552135, GSM552136, GSM552137 
Series (19)
GSE22209 Reduced seed region-based off-target activity with lentivirus-mediated RNAi
GSE22396 Gene expression analysis of Merkel Cell Carcinoma
GSE23352 Whole-genome gene expression profiles of non-tumorous human lung tissues: Laval set

Data table header descriptions
ID
EntrezGeneID Entrez Gene identifier for the gene represented
GeneSymbol Gene symbol for the gene represented
GB_ACC GenBank or RefSeq accession
miRNA_ID miRNA identifier
ORF open reading frame designator
PROBE_DERIVED_FROM_TRANSCRIPT Actual transcript sequence from which the probe was derived
SPOT_ID
RosettaGeneModelID Rosetta internal gene identifier

Data table
ID EntrezGeneID GeneSymbol GB_ACC miRNA_ID ORF PROBE_DERIVED_FROM_TRANSCRIPT SPOT_ID RosettaGeneModelID
100138926_TGI_at 6566 SLC16A1 BC026317 BC026317 HSG00206767
100131045_TGI_at BX098869 BX098869 HSG00284033
100134882_TGI_at 3458 IFNG NM_000619 NM_000619 HSG00277939
100149534_TGI_at 51552 RAB14 AK090889 AK090889 HSG00261054
100160054_TGI_at 64848 YTHDC2 AK131450 AK131450 HSG00236721
100146505_TGI_at AL133618 AL133618 HSG00313131
100140938_TGI_at BC033700 BC033700 HSG00259642
100132399_TGI_at 8452 CUL3 NM_003590 NM_003590 HSG00214321
100152215_TGI_at 283742 FAM98B FAM98B non-public ENSEMBL:ENST00000305752 HSG00290594
100147785_TGI_at 10048 RANBP9 NM_005493 NM_005493 HSG00243998
100138290_TGI_at 9857 CEP350 CEP350 non-public ENSEMBL:ENST00000357434 HSG00201115
100135090_TGI_at 613209 DEFB135 NM_001033017 NM_001033017 HSG00432917
100310799_TGI_at 127 ADH4 AV648121 AV648121 HSG00228552
100123722_TGI_at 10202 DHRS2 NM_005794 NM_005794 HSG00288471
100311433_TGI_at 79705 LRRK1 AK225575 AK225575 HSG00289852
100137544_TGI_at 2184 FAH NM_000137 NM_000137 HSG00291601
100142142_TGI_at 10663 CXCR6 NM_006564 NM_006564 HSG00221302
100129675_TGI_at AK026195 AK026195 HSG00265920
100307002_TGI_at 54516 MTRF1L BQ961571 BQ961571 HSG00244590
100144445_TGI_at 57556 SEMA6A SEMA6A non-public ENSEMBL:ENST00000257414 HSG00237491

Total number of rows: 52378

Table truncated, full table size 3197 Kbytes.






Download family Format
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Supplementary file Size Download File type/resource
GPL10379_HuRSTA-2a520709_custom_MMPM.cdf.gz 14.8 Mb (ftp)(http) CDF
GPL10379_probe_sequences.txt.gz 6.6 Mb (ftp)(http) TXT

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