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Platform GPL10123 Query DataSets for GPL10123
Status Public on Mar 10, 2010
Title Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description SurePrint G3 Human CGH Microarray 4x180K

Arrays of this design have barcodes that begin with 16022060 or 2522060.

Data table annotations based on build hg18:NCBI36:Mar2006.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number. A different version of this platform with the Agilent Probe Names in the ID column is assigned accession number GPL10150.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Mar 02, 2010
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (1114) GSM536304, GSM536305, GSM536306, GSM536307, GSM536308, GSM536309 
Series (71)
GSE21468 Array CGH-based Characterization of Genetic Alterations in Pulmonary Neuroendocrine Tumors
GSE23065 Multiple chromosomal monosomies are characteristic of giant cell ependymoma
GSE23540 Copy number aberrations of genes regulating normal thymus development in thymic epithelial tumors
Relations
Alternative to GPL10150

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Agilent Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank or RefSeq Accession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
RANGE_GB RefSeq.version of chromosome (NBCI Build 36)
RANGE_START Start position (relative to the RANGE_GB accession)
RANGE_END End position (relative to the RANGE_GB accession)
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION RANGE_GB RANGE_START RANGE_END CYTOBAND DESCRIPTION
1 532 340 HsCGHBrightCorner pos
2 532 338 DarkCorner2 pos
3 532 336 DarkCorner2 pos
4 532 334 DarkCorner2 pos
5 532 332 DarkCorner2 pos
6 532 330 DarkCorner2 pos
7 532 328 DarkCorner2 pos
8 532 326 DarkCorner2 pos
9 532 324 DarkCorner2 pos
10 532 322 DarkCorner2 pos
11 532 320 DarkCorner2 pos
12 532 318 DarkCorner2 pos
13 532 316 DarkCorner2 pos
14 532 314 DarkCorner2 pos
15 532 312 DarkCorner2 pos
16 532 310 DarkCorner2 pos
17 532 308 DarkCorner2 pos
18 532 306 DarkCorner2 pos
19 532 304 DarkCorner2 pos
20 532 302 DarkCorner2 pos

Total number of rows: 180880

Table truncated, full table size 33868 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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