GEO help: Mouse over screen elements for information.
Status
Public on Mar 02, 2010
Title
Agilent-020186 C. elegans (V2) Gene Expression Microarray (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Caenorhabditis elegans Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Caenorhabditis elegans (Nematode) Oligo Microarray
Submission date
Feb 22, 2010
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (393)
GSM767758 , GSM767759 , GSM767760 , GSM767761 , GSM767762 , GSM767763
GSM767764 ,
GSM767765 ,
GSM892932 ,
GSM892933 ,
GSM892934 ,
GSM895821 ,
GSM895822 ,
GSM895823 ,
GSM895824 ,
GSM895879 ,
GSM895880 ,
GSM895881 ,
GSM895882 ,
GSM895904 ,
GSM895905 ,
GSM895906 ,
GSM895907 ,
GSM899880 ,
GSM899881 ,
GSM899882 ,
GSM899883 ,
GSM1074187 ,
GSM1074188 ,
GSM1074189 ,
GSM1089129 ,
GSM1089130 ,
GSM1089131 ,
GSM1089132 ,
GSM1089133 ,
GSM1089134 ,
GSM1116986 ,
GSM1116987 ,
GSM1116988 ,
GSM1116989 ,
GSM1496528 ,
GSM1496529 ,
GSM1496530 ,
GSM1496531 ,
GSM1496532 ,
GSM1496533 ,
GSM1496534 ,
GSM1496535 ,
GSM1496536 ,
GSM1496537 ,
GSM1496538 ,
GSM1496539 ,
GSM1655343 ,
GSM1655344 ,
GSM1655345 ,
GSM1655346 ,
GSM1668947 ,
GSM1668948 ,
GSM1668949 ,
GSM1668950 ,
GSM1668951 ,
GSM1668952 ,
GSM1668953 ,
GSM1668954 ,
GSM1668955 ,
GSM1668956 ,
GSM1668957 ,
GSM1668958 ,
GSM1668959 ,
GSM1668960 ,
GSM1668961 ,
GSM1668962 ,
GSM1668963 ,
GSM1668964 ,
GSM1668965 ,
GSM1668966 ,
GSM1668967 ,
GSM1668968 ,
GSM1668969 ,
GSM1668970 ,
GSM1984499 ,
GSM1984500 ,
GSM1984502 ,
GSM1984503 ,
GSM1984505 ,
GSM1984507 ,
GSM1984508 ,
GSM1984510 ,
GSM1984512 ,
GSM1984513 ,
GSM1984515 ,
GSM1984516 ,
GSM1984518 ,
GSM1984520 ,
GSM1984521 ,
GSM1984523 ,
GSM1984524 ,
GSM1984526 ,
GSM1984528 ,
GSM1984529 ,
GSM1984531 ,
GSM1984532 ,
GSM1984534 ,
GSM1984536 ,
GSM1984537 ,
GSM1984539 ,
GSM1984540 ,
GSM1984542 ,
GSM1984544 ,
GSM1984546 ,
GSM1984547 ,
GSM1984549 ,
GSM1984550 ,
GSM1984552 ,
GSM1984554 ,
GSM1984555 ,
GSM1984557 ,
GSM1984558 ,
GSM1984560 ,
GSM1984562 ,
GSM1984563 ,
GSM1984565 ,
GSM1984567 ,
GSM1984569 ,
GSM1984570 ,
GSM1984572 ,
GSM1984573 ,
GSM1984575 ,
GSM2009927 ,
GSM2009928 ,
GSM2009929 ,
GSM2009930 ,
GSM2009931 ,
GSM2009933 ,
GSM2009934 ,
GSM2009935 ,
GSM2009936 ,
GSM2009937 ,
GSM2009938 ,
GSM2009939 ,
GSM2009941 ,
GSM2009942 ,
GSM2009943 ,
GSM2009944 ,
GSM2009945 ,
GSM2009946 ,
GSM2009947 ,
GSM2009948 ,
GSM2009949 ,
GSM2009951 ,
GSM2009952 ,
GSM2009953 ,
GSM2009954 ,
GSM2009955 ,
GSM2009956 ,
GSM2009957 ,
GSM2009958 ,
GSM2009959 ,
GSM2061172 ,
GSM2061173 ,
GSM2061174 ,
GSM2061175 ,
GSM2061176 ,
GSM2061177 ,
GSM2061178 ,
GSM2061179 ,
GSM2061180 ,
GSM2061181 ,
GSM2061182 ,
GSM2061183 ,
GSM2061184 ,
GSM2061185 ,
GSM2061186 ,
GSM2061187 ,
GSM2061188 ,
GSM2061189 ,
GSM2061190 ,
GSM2061191 ,
GSM2061192 ,
GSM2061193 ,
GSM2061194 ,
GSM2061195 ,
GSM2061196 ,
GSM2061197 ,
GSM2061198 ,
GSM2061199 ,
GSM2061200 ,
GSM2061201 ,
GSM2061202 ,
GSM2061203 ,
GSM2061204 ,
GSM2061205 ,
GSM2061206 ,
GSM2061207 ,
GSM2061208 ,
GSM2061209 ,
GSM2061210 ,
GSM2061211 ,
GSM2061212 ,
GSM2061213 ,
GSM2061214 ,
GSM2061215 ,
GSM2061216 ,
GSM2061217 ,
GSM2061218 ,
GSM2061219 ,
GSM2061220 ,
GSM2061221 ,
GSM2061222 ,
GSM2061223 ,
GSM2061224 ,
GSM2061225 ,
GSM2061226 ,
GSM2061227 ,
GSM2061228 ,
GSM2061229 ,
GSM2061230 ,
GSM2061231 ,
GSM2061232 ,
GSM2061233 ,
GSM2061234 ,
GSM2061235 ,
GSM2061236 ,
GSM2061237 ,
GSM2061238 ,
GSM2061239 ,
GSM2061240 ,
GSM2061241 ,
GSM2061242 ,
GSM2061243 ,
GSM2061244 ,
GSM2061245 ,
GSM2061246 ,
GSM2061247 ,
GSM2061248 ,
GSM2061249 ,
GSM2151978 ,
GSM2151979 ,
GSM2151980 ,
GSM2151981 ,
GSM2151982 ,
GSM2151983 ,
GSM2151984 ,
GSM2151985 ,
GSM2151986 ,
GSM2151987 ,
GSM2151988 ,
GSM2151989 ,
GSM2262725 ,
GSM2262726 ,
GSM2262727 ,
GSM2262728 ,
GSM2262729 ,
GSM2262730 ,
GSM2262731 ,
GSM2302467 ,
GSM2302468 ,
GSM2302469 ,
GSM2302470 ,
GSM2302471 ,
GSM2302472 ,
GSM2433044 ,
GSM2433045 ,
GSM2433046 ,
GSM2433047 ,
GSM2433048 ,
GSM2433049 ,
GSM2433050 ,
GSM2433051 ,
GSM2433052 ,
GSM2433053 ,
GSM2433054 ,
GSM2433055 ,
GSM2433056 ,
GSM2433057 ,
GSM2433058 ,
GSM2433059 ,
GSM2433060 ,
GSM2433061 ,
GSM2433062 ,
GSM2433063 ,
GSM2433064 ,
GSM2433065 ,
GSM2433066 ,
GSM2433067 ,
GSM2630347 ,
GSM2630348 ,
GSM2630349 ,
GSM2630350 ,
GSM2916849 ,
GSM2916850 ,
GSM2916851 ,
GSM2916852 ,
GSM2916853 ,
GSM2916854 ,
GSM2916855 ,
GSM2916856 ,
GSM2916857 ,
GSM2916858 ,
GSM2916859 ,
GSM2916860 ,
GSM2916861 ,
GSM2916862 ,
GSM2916863 ,
GSM2916864 ,
GSM2916865 ,
GSM2916866 ,
GSM2916867 ,
GSM2916868 ,
GSM2916869 ,
GSM2916870 ,
GSM2916871 ,
GSM2916872 ,
GSM2916873 ,
GSM2916874 ,
GSM2916875 ,
GSM2916876 ,
GSM2916877 ,
GSM2916878 ,
GSM2916879 ,
GSM2916880 ,
GSM4143469 ,
GSM4143470 ,
GSM4143471 ,
GSM4143472 ,
GSM4143473 ,
GSM4143474 ,
GSM4143475 ,
GSM4143476 ,
GSM4143477 ,
GSM4143478 ,
GSM4143479 ,
GSM4143480 ,
GSM4143481 ,
GSM4143482 ,
GSM4143483 ,
GSM4143484 ,
GSM4143485 ,
GSM4143486 ,
GSM4143487 ,
GSM4143488 ,
GSM4143489 ,
GSM4143490 ,
GSM4143491 ,
GSM4143492 ,
GSM4290794 ,
GSM4290795 ,
GSM4290796 ,
GSM4290797 ,
GSM4290798 ,
GSM4290799 ,
GSM4290800 ,
GSM4290801 ,
GSM4290802 ,
GSM4290803 ,
GSM4290804 ,
GSM4290805 ,
GSM4290806 ,
GSM4290807 ,
GSM4290808 ,
GSM4290809 ,
GSM4290810 ,
GSM4290811 ,
GSM4290812 ,
GSM4290813 ,
GSM4290814 ,
GSM4290815 ,
GSM4290816 ,
GSM4290817 ,
GSM4290818 ,
GSM4290819 ,
GSM4290820 ,
GSM4290821 ,
GSM4290822 ,
GSM4290823 ,
GSM4290824 ,
GSM4290825 ,
GSM5904046 ,
GSM5904048 ,
GSM5904050 ,
GSM5904052 ,
GSM5904054 ,
GSM5904056 ,
GSM5904058 ,
GSM5904060 ,
GSM5904061 ,
GSM5904063 ,
GSM5904065 ,
GSM5904072 ,
GSM5904073 ,
GSM5904075 ,
GSM5904077 ,
GSM5904079 Series (28)
GSE30977 C. elegans: Dauers and Dauer-Exit at 12 hour time-point vs. Mix-stage worms
GSE36413 C. elegans young adults: Exposed to Bacillus thuringiensis DB27 versus exposed to E. coli OP50 : 4 hours
GSE36493 C. elegans immune response to Staphylococcus aureus, 4 hour exposure
GSE36499 C. elegans young adults: Exposed to Serratia marcescens versus exposed to E. coli OP50 : 4 hours
GSE36501 C. elegans young adults: Exposed to Xenorhabdus nematophila versus exposed to E. coli OP50 : 4 hours
GSE36636 P. pacificus and C. elegans exposed to various pathogens
GSE36644 Pristionchus pacificus and Caenorhabditis elegans: Dauer and Dauer exit versus mix-stage comparisons
GSE36733 C. elegans young adults cultured on Bacillus subtilis strain 67 vs cultured on E. coli OP50
GSE43905 C. elegans nasp-1 / btr-1 mutant versus wild-type N2, exposed to pathogen Bacillus thuringiensis DB27
GSE44702 C. elegans germline-ablated (Z2-, Z3-) animals versus intact animals, N2 strain
GSE44703 C. elegans gonad-ablated (Z1-,Z4-) animals versus intact animals, N2 strain
GSE45871 Microarray profiling, C elegans: Neuronal miRISC IP vs Total RNA
GSE61094 The SET-2/SET1 histone H3K4 methyltransferase maintains pluripotency in the caenorhabditis elegans germline.
GSE67754 Transcriptomic profile of the homeodomain protein CEH-23 under mitochondrial ETC stress in C. elegans
GSE68351 Gene expression in plep-1 mutant young adult hermaphrodites
GSE76380 NAD+ Replenishment Improves Lifespan and Healthspan in Ataxia Telangiectasia Models via Mitophagy and DNA Repair.
GSE76413 MicroRNA mir-34 provides robustness to environmental stress response in C. elegans
GSE77905 Natural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways
GSE81409 Gene expression levels dependent on cultivated temperature
GSE85237 Tomatidine enhances lifespan and healthspan in C. elegans through mitophagy induction via the SKN-1/Nrf2 pathway.
GSE86431 Whole-genome microarray of Caenorhabditis elegans strains DA650 and RC301 exposed to Pseudomonas aeruginosa PA14
GSE92588 Transcriptome States Reflect Imaging of Aging States
GSE99020 Differentially expressed genes between C.elegans with low physical ability and with high physical ability
GSE108968 NAD+ repletion inhibits accelerated aging in Werner syndrome through the restoration of mitophagy
GSE139562 PQM-1 and Cobalt Chloride dependent gene expression changes in C. elegans
GSE144556 Cockayne syndrome proteins CSA and CSB maintain mitochondrial homeostasis through NAD+ signaling [Agilent-020186 array]
GSE144558 Cockayne syndrome proteins CSA and CSB maintain mitochondrial homeostasis through NAD+ signaling
GSE196891 Transcriptomic analysis in Caenorhabditis elegans exposed to organic and inorganic forms of arsenic or mercury
Relations Alternative to
GPL11346
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank or RefSeq accession
LOCUSLINK_ID Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
A_12_P150300
FALSE
NM_001027380 175659 rrt-1
aRginyl aa-tRNA syntheTase
Cel.17117
wb|F26F4.10b.1|wb|F26F4.10b.2|wb|F26F4.10a.2|wb|F26F4.10a.1
chrIII:4914443-4914384
rrt-1 encodes an arginyl-tRNA synthetase that affects embryonic viability and fertility [Source: WormBase] [F26F4.10b.1]
GO:0000166(nucleotide binding)|GO:0002119(nematode larval development)|GO:0004812(aminoacyl-tRNA ligase activity)|GO:0004814(arginine-tRNA ligase activity)|GO:0005524(ATP binding)|GO:0005737(cytoplasm)|GO:0006412(translation)|GO:0006418(tRNA aminoacylation for protein translation)|GO:0006420(arginyl-tRNA aminoacylation)|GO:0009792(embryonic development ending in birth or egg hatching)|GO:0040007(growth)|GO:0040010(positive regulation of growth rate)|GO:0040019(positive regulation of embryonic development)
TGGCCACTCTGTTCCACGACTTCTACAACGAGTGTTACGTTATTGAAAATAAGGAAGGAG
13
266
146
A_12_P133604
FALSE
NM_001038332 3896780 K03H6.6
hypothetical protein
Cel.37657
wb|K03H6.6|ref|NM_001038332
chrIV:1545411-1545352
Putative uncharacterized protein; [Source:UniProtKB/TrEMBL;Acc:Q4R124] [K03H6.6]
CTTCCGGAGGAAAATCCTGCAAACAATTTGTATATTTTGTGCGTGTTATTTTCTCATTCC
14
266
144
A_12_P159775
FALSE
tc|TC138485
chrV:12623827-12623768
CAGGTTCATCGGCTGGAAATTGATATTTAAGATATGGGTTCTAAGAAGAGCGTTTTCTAA
15
266
142
A_12_P177079
FALSE
NM_073631 187659 R07B7.12
hypothetical protein
Cel.2868
wb|R07B7.12a|ref|NM_073631|tc|TC149742
chrV:12091698-12091757
UPF0392 protein R07B7.12; [Source:UniProtKB/Swiss-Prot;Acc:Q21802] [R07B7.12a]
GO:0016021(integral to membrane)
AGAAATGTACCCGATCACTTTCCATTATGCAGTTCATCCATTTTGGTCGAATGACATTGG
16
266
140
A_12_P109691
FALSE
NM_058966 259373 C11D9.1
hypothetical protein
Cel.19240
wb|C11D9.1|ref|NM_058966|tc|TC138879
chrI:4425966-4426025
Putative uncharacterized protein; [Source:UniProtKB/TrEMBL;Acc:O01847] [C11D9.1]
GO:0005089(Rho guanyl-nucleotide exchange factor activity)|GO:0005622(intracellular)|GO:0035023(regulation of Rho protein signal transduction)
TCGAGAATCACATCGTCCATTAAGTGGATCTAGTCAATCGGATGGTGGTTATGTGTCAGA
17
266
138
A_12_P140847
FALSE
NM_072896 Cel.21806
wb|K06C4.5|ref|NM_072896
chrV:8897562-8897503
his-17 encodes an H3 histone. his-17 is contained within the histone gene cluster HIS4. [Source: WormBase] [K06C4.5]
CCTAAATTTCTGATTTTCAGAGTTTGAGACCGTTTCGATTCAAACCCCCACCGAACCCAA
18
266
136
A_12_P157256
FALSE
NM_066747 182353 clec-162
C-type LECtin
Cel.34038
ref|NM_066747
chrIII:9723746-9723292
Caenorhabditis elegans C-type LECtin family member (clec-162) (clec-162) mRNA, complete cds [NM_066747]
GO:0005488(binding)
ACAGCTAGGGGAAATGGATCATCAGTAGCCGAGGAGCTCAATTCAAATTCAAAGGAAAAA
19
266
134
A_12_P137370
FALSE
NM_001129563 6418794 Y37H2A.13
hypothetical protein
Cel.37690
wb|Y37H2A.13|ref|NM_001129563|gb|FM251385
chrV:18143359-18143417
Protein Y37H2A.13, confirmed by transcript evidence; [Source:UniProtKB/TrEMBL;Acc:A5PEY1] [Y37H2A.13]
GGAATGATTGTTCGCACAGAGGACATCAACTTGTCGATGCTTCATAGTTCTTTAATCTTG
20
266
132
A_12_P108125
FALSE
NM_001027838 176806 cul-2
CULlin
Cel.21341
ref|NM_001027838|gb|U58084|tc|TC143871
chrIII:13690983-13691536
Caenorhabditis elegans CULlin family member (cul-2) (cul-2) mRNA, complete cds [NM_001027838]
GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0006511(ubiquitin-dependent protein catabolic process)|GO:0007138(meiotic anaphase II)|GO:0008054(cyclin catabolic process)|GO:0008105(asymmetric protein localization)|GO:0008595(determination of anterior/posterior axis, embryo)|GO:0009792(embryonic development ending in birth or egg hatching)|GO:0031461(cullin-RING ubiquitin ligase complex)|GO:0031625(ubiquitin protein ligase binding)|GO:0042078(germ-line stem cell division)|GO:0051232(meiotic spindle elongation)|GO:0051759(sister chromosome movement towards spindle pole during meiosis II)
CGTCGCGAATACTTTCCAGGTTTCACAAGACCGAAAGTACTATATGGAGTGCGCAATTGT
45220 19864 Kbytes .Supplementary file Size Download File type/resource GPL10094_old_annotations.txt.gz
5.9 Mb
(ftp) (http) TXT
Less...
More...