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Series GSE180041 Query DataSets for GSE180041
Status Public on Jul 16, 2022
Title Assessing the role of TPL2 in TauP301S mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary ScRNAseq analysis shows
•TPL2 KD (kinase dead) reduced TauP301S dependent IEG and MHCII activation states in microglia
•TPL2 KD reduced peripheral immune cell infiltration in TauP301S mouse brain
 
Overall design Single cell suspensions of mouse hippocampi were obtained by FACS from ~ 9-month-old TPL2 KD mice crossed with TauP301S mice and littermate control mice.
Samples analyzed:
1. Tpl2 wt/wt, Tau P301S -/-, n = 3
2. Tpl2 kd/kd, Tau P301S -/-, n = 3
3. Tpl2 wt/wt, Tau P301S +/-, n = 6
4. Tpl2 kd/kd Tau P301S +/-, n = 6
 
Contributor(s) Wang Y, Hanson J, Friedman B, Rezzonico M, Mohamed A, Modrusan Z
Citation(s) 37118504
Submission date Jul 13, 2021
Last update date Aug 02, 2023
Contact name Alyaa M Mohamed
E-mail(s) alyaa.mohamed@roche.com
Phone 4373391720
Organization name Hoffman La Roche
Street address 7070 Mississauga Road Mississauga, ON L5N 5M8 Canada
City Mississauga
State/province Ontario
ZIP/Postal code L5N 5M8
Country Canada
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (18)
GSM5448691 SAM24376438
GSM5448692 SAM24376439
GSM5448693 SAM24376440
Relations
BioProject PRJNA746341
SRA SRP328209

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE180041_exonic_norm_umi.csv.gz 3.0 Gb (ftp)(http) CSV
GSE180041_exonic_umi.csv.gz 341.6 Mb (ftp)(http) CSV
GSE180041_tsne_coordinates_and_cluster_labels_all_cells.csv.gz 2.7 Mb (ftp)(http) CSV
GSE180041_tsne_coordinates_and_cluster_labels_immune_cells.csv.gz 1.0 Mb (ftp)(http) CSV
GSE180041_tsne_coordinates_and_cluster_labels_microglia_cells.csv.gz 1010.2 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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