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562 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Homo sapiens		TAB
GSE149973	Decoding SARS-CoV-2 coding capacity	Expression profiling by high throughput sequencing Other	Chlorocebus aethiops aethiops Homo sapiens Severe acute respiratory syndrome coronavirus 2	26	TAB WIG SRA Run Selector	Noam Stern-Ginossar	May 08, 2020
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE76049	The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	98	BED TAB TXT	Rolf Ohlsson	Sep 30, 2019
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023
GSE69656	An Alternative Splicing Event Amplifies Evolutionary Differences Between Vertebrates	Expression profiling by high throughput sequencing	Gallus gallus Homo sapiens	14	TAB SRA Run Selector	Serge Gueroussov	Sep 01, 2015
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE28864	A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins (mRNA-seq)	Expression profiling by high throughput sequencing	Homo sapiens	10	TAB SRA Run Selector	Jean Hausser	May 15, 2011
GSE28865	A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins	Expression profiling by high throughput sequencing	Homo sapiens	23	FA TAB	Jean Hausser	May 15, 2011
GSE38771	Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	13	BEDGRAPH CALLS PAIR TAB	Peter J Park	Jul 16, 2012
GSE41437	The viral and cellular microRNA targetome in lymphoblastoid cell lines	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	11	BED TAB SRA Run Selector	Rebecca L Skalsky	Oct 16, 2012
GSE42608	Whole-transcriptome high-throughput RNA sequencing of blood leukocytes from Parkinson's disease human patients pre- and post-deep brain stimulation	Expression profiling by high throughput sequencing	Homo sapiens	13	BED GFF3 TAB TXT SRA Run Selector	Lilach Soreq	Jul 16, 2014
GSE44718	Multiple roles for Grainyheadlike transcription factors in the establishment and maintenance of human mucociliary airway epithelium	Expression profiling by high throughput sequencing	Homo sapiens	8	TAB SRA Run Selector	Timothy E Reddy	May 07, 2013
GSE45157	Trans-chromosomal regulation by a novel lincRNA required for adipogenesis that escapes X-chromosome inactivation	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	21	TAB TXT SRA Run Selector	Loyal A Goff	Jun 01, 2013
GSE45202	Amplitude modulation of androgen signaling by c-MYC [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	3	TAB SRA Run Selector	Yiwen Chen	Mar 16, 2013
GSE47114	RNA-Guided Human Gene Activation by Cas9/CRISPR-Based Engineered Transcription Factors	Expression profiling by high throughput sequencing	Homo sapiens	7	TAB SRA Run Selector	Timothy E Reddy	Jul 25, 2013
GSE50676	Landscape and variation of RNA secondary structure across the human transcriptome	Expression profiling by high throughput sequencing Other	Homo sapiens	18	BED TAB TXT SRA Run Selector	Kun Qu	Dec 19, 2013
GSE51428	Transcriptomic profiling reveals new aspects of progestin signaling in breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	TAB TXT SRA Run Selector	Angeliki Magklara	Jun 05, 2014
GSE53215	Genome-wide profiling of histone H3 lysine 27 and lysine 4 trimethylation in multiple myeloma reveals the importance of Polycomb gene targeting and highlights EZH2 as a potential therapeutic target [Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	16	BED TAB SRA Run Selector	Prasoon Agarwal	Dec 31, 2015
GSE56785	RNA-Seq characterization of human H1-derived NPC differentiation timecourse	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	20	TAB SRA Run Selector	Loyal A Goff	Apr 15, 2014
GSE57395	Direct Induction of Hematoendothelial Program in Human Pluripotent Stem Cells by Transcriptional Regulators	Expression profiling by high throughput sequencing	Homo sapiens	54	TAB SRA Run Selector	Scott Swanson	Jul 14, 2014