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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Escherichia coli			BW
GSE98660	Natural RNA polymerase aptamers regulate transcription in E. coli [3' RACE]	Expression profiling by high throughput sequencing Other	Escherichia coli	2		BW GFF3 SRA Run Selector	Philipp Rescheneder	Jun 01, 2017
GSE98661	Natural RNA polymerase aptamers regulate transcription in E. coli	Expression profiling by high throughput sequencing Other	Escherichia coli	3		BED BW	Philipp Rescheneder	Jun 01, 2017
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36		BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE183453	R-loop landscapes during parental-to-zygotic transition in zebrafish	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana Danio rerio Escherichia coli synthetic construct	60		BW SRA Run Selector	li kuan	May 29, 2024
GSE206872	Induction of neurons from mouse ESC by the bHLH factors Ascl1 and Ngn2 shows distinct genetic dependencies, pluripotency exit, and cell cycle shutdown.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Mus musculus	64		BW TXT	Gintautas Vainorius	Jul 17, 2023
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27		BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384		BW TXT	Changbin Sun	Jun 11, 2024
GSE245749	TnpB homologs exapted from transposons are RNA-guided transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Enterobacter cloacae Enterobacter sp. BIDMC93 Escherichia coli	51		BED BW XLSX	Samuel Henry Sternberg	Apr 22, 2024
GSE261343	Antagonistic conflict between transposon-encoded introns and guide RNAs (RNA-Seq)	Expression profiling by high throughput sequencing	Clostridium senegalense Escherichia coli	4		BW	Samuel Henry Sternberg	May 06, 2024
GSE261344	Antagonistic conflict between transposon-encoded introns and guide RNAs	Expression profiling by high throughput sequencing Other	Clostridium senegalense Escherichia coli	8		BW	Samuel Henry Sternberg	May 06, 2024