GEO Browser - GEO

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226 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Oryza sativa		SRA Run Selector
GSE17398	Transcriptome-wide identification of small RNA targets in rice	Expression profiling by high throughput sequencing	Oryza sativa	1	TXT SRA Run Selector	Ramanjulu Sunkar	May 04, 2010
GSE18248	Sequencing of rice degradome	Expression profiling by high throughput sequencing	Oryza sativa	2	SRA Run Selector	Yijun Qi	Nov 23, 2009
GSE19602	Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	24	BED TAR SRA Run Selector	guangming he	Jan 20, 2010
GSE19824	Genome-wide evolutionary analysis of eukaryotic DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Bombyx mori Chlorella variabilis Ciona intestinalis Coprinopsis cinerea Drosophila melanogaster Laccaria bicolor Nematostella vectensis Oryza sativa Phycomyces blakesleeanus Physcomitrium patens Rhodonia placenta Selaginella moellendorffii Tetraodon nigroviridis Tribolium castaneum Uncinocarpus reesii Volvox carteri	33	GFF TXT SRA Run Selector	Toshiro Nishimura	Apr 15, 2010
GSE25596	Deep Transcriptional Profiling of Rice Using Illumina's Sequencing By Synthesis Technology	Expression profiling by high throughput sequencing	Oryza sativa	43	TXT SRA Run Selector	Blake C. Meyers	Jun 22, 2011
GSE27240	Digital gene expression analysis of 5 rice samples	Expression profiling by high throughput sequencing	Oryza sativa	5	TXT SRA Run Selector	Chen Li	Jan 01, 2012
GSE33265	Transcriptome of rice seedling and callus based on RNA-seq method	Expression profiling by high throughput sequencing	Oryza sativa	4	BAM DIFF SRA Run Selector	Yufeng Wu	Nov 09, 2011
GSE41183	OsJMJ703, a Histone H3K4 Demethylase, Controls Transposon Activity in Rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	4	WIG SRA Run Selector	xiaofeng cao	Jan 01, 2013
GSE41797	Transcriptome Analysis of Rice Root Heterosis by RNA-Seq	Expression profiling by high throughput sequencing	Oryza sativa	12	TXT SRA Run Selector	Rongrong Zhai	Aug 19, 2013
GSE42314	RNase ZS1-mediated UbL40 mRNA decay controls thermo-sensitive genic male sterility in rice.	Expression profiling by high throughput sequencing	Oryza sativa	6	WIG SRA Run Selector	xiaofeng cao	Sep 11, 2014
GSE42410	Plants regenerated from tissue culture contain stable epigenome changes in rice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	37	TXT SRA Run Selector	Hume Stroud	Mar 26, 2013
GSE49633	The Polycomb Group Gene EMF2B is required for meristem determinacy and organ specification in rice flowers.	Expression profiling by high throughput sequencing	Oryza sativa	4	CSV SRA Run Selector	Venkatesan Sundaresan	Oct 31, 2014
GSE50778	Control of agricultural traits by hc-siRNA associated MITEs in rice	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	6	BIGWIG WIG SRA Run Selector	Lianfeng Gu	Feb 04, 2014
GSE51468	Small RNAs as important regulators for the hybrid vigour of super-hybrid rice	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	12	TXT SRA Run Selector	Zhen Zhu	Aug 17, 2014
GSE52394	Illumina Solexa Digital Gene Expression Sequencing Facilitates Quantitative Analysis of Wild Type (Kasa-1) and OsMYB103L overexpression transgenic rice plant (Y103-1). Transcriptomes	Expression profiling by high throughput sequencing	Oryza sativa	2	TXT SRA Run Selector	lili hao	Nov 13, 2016
GSE54274	Exploring the mechanism of C4 photosynthetic differentiation through a unified comparative analysis of maize and rice leaf transcriptomes	Expression profiling by high throughput sequencing	Oryza sativa Zea mays	119	TXT SRA Run Selector	Timothy Nelson	Oct 12, 2014
GSE55234	Global expression profiles of the wild-type and overexpression of OsNMD3ΔNLS transgenic plants	Expression profiling by high throughput sequencing	Oryza sativa	3	TXT SRA Run Selector	Baocai Zhang	May 21, 2014
GSE57670	Deep Transcriptome Sequencing of a Rice Line Immune to Bacterial Blight Provides Novel Insights into Incompatible Interactions between Rice and Xanthomonas oryzae pv. oryzae	Expression profiling by high throughput sequencing	Oryza sativa Xanthomonas oryzae pv. oryzae	6	TXT SRA Run Selector	Fan Zhang	Dec 30, 2015
GSE57950	Molecular dissection of drought tolerance mechanisms in rice by comparative deep transcriptome sequencing	Expression profiling by high throughput sequencing	Oryza sativa	18	TXT SRA Run Selector	Fan Zhang	Dec 30, 2014
GSE60287	Stress responsive gene expression in rice cultivars	Expression profiling by high throughput sequencing	Oryza sativa	7	TXT SRA Run Selector	Mukesh Jain	Dec 31, 2015