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22504 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		TXT
GSE160390	PEZIC_STAG1_Pluripotency	Expression profiling by high throughput sequencing Other	Mus musculus	33	BAI BAM TXT	Suzana Hadjur	Jun 06, 2021
GSE29184	A draft map of cis-regulatory sequences in the mouse genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	143	BAM BIGWIG BOWTIE TXT	Bing Ren	Jul 01, 2012
GSE32190	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros (RNA-seq: Thymocytes)	Expression profiling by high throughput sequencing	Mus musculus	7	BAM BEDGRAPH BIGWIG SAM TXT SRA Run Selector	Hilde Schjerven	Sep 08, 2013
GSE32916	Analysis of Pro-Inflammatory Gene Activation and RNA Processing by RNAseq of Nascent Transcripts I	Expression profiling by high throughput sequencing	Mus musculus	15	BAM TXT XLS SRA Run Selector	Stephen Smale	May 03, 2012
GSE33141	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Nrl-/- Retinal Transcriptomes	Expression profiling by high throughput sequencing	Mus musculus	6	BAM TXT XLS SRA Run Selector	HARSHA KARUR RAJASIMHA	Oct 25, 2011
GSE33306	Alternative splicing controlled by heterogeneous nuclear ribonucleoprotein L (hnRNP L) regulates development, proliferation and migration of thymic pre-T cells	Expression profiling by high throughput sequencing	Mus musculus	4	BAM TXT SRA Run Selector	Brian Wilhelm	Apr 24, 2012
GSE33693	Selective Functions of Individual Zinc Fingers Within the DNA-Binding Domain of Ikaros	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BAM BEDGRAPH BIGWIG SAM TXT	Hilde Schjerven	Sep 08, 2013
GSE33722	Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BAM BED TXT	Wei Xie	Feb 15, 2012
GSE33815	Analysis of Fetal liver cells from hnRNP L KO mice	Expression profiling by high throughput sequencing	Mus musculus	4	BAM TXT SRA Run Selector	Brian Wilhelm	Dec 31, 2013
GSE36025	Long RNA-seq from ENCODE/Cold Spring Harbor Lab	Expression profiling by high throughput sequencing	Mus musculus	30	BAM BEDRNAELEMENTS BIGWIG TXT SRA Run Selector	ENCODE DCC	Apr 02, 2012
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE47966	Global epigenomic reconfiguration during mammalian brain development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BAM TXT SRA Run Selector	Joseph R Ecker	Jul 03, 2013
GSE57369	The chromatin modifier CHD8 targets autism risk genes during human neurodevelopment	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	26	BAM BED BW TXT SRA Run Selector	Justin Cotney	Jan 21, 2015
GSE63269	Drop-Seq analysis of mixtures of human (HEK) and mouse (3T3) cells (1000/100 STAMPs) at 50 cells per microliter	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	2	BAM TXT SRA Run Selector	Evan Macosko	May 20, 2015
GSE63472	Drop-Seq analysis of P14 mouse retina single-cell suspension	Expression profiling by high throughput sequencing Other	Mus musculus	7	BAM TXT SRA Run Selector	Evan Macosko	May 20, 2015
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE66693	Drop-Seq analysis of mixtures of human (HEK) and mouse (3T3) cells (1000/100 STAMPs) at 12.5 cells per microliter	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	1	BAM TXT SRA Run Selector	Evan Macosko	May 20, 2015
GSE81904	Drop-Seq analysis of P17 FACS sorted retinal cells from the Tg(Chx10-EGFP/cre,-ALPP)2Clc or Vsx2-GFP transgenic line	Expression profiling by high throughput sequencing	Mus musculus	6	BAM R RDATA TXT SRA Run Selector	Karthik Shekhar	Aug 25, 2016
GSE136284	RNAseq of C57BL/6J and C57BL6/J Sarm1-deficient mice to determine if genes surrounding the knockout locus are B6 or 129 sequence	Expression profiling by high throughput sequencing	Mus musculus	4	BAM TXT SRA Run Selector	Melissa B Uccellini	Feb 23, 2020
GSE246857	Using long-read sequencing to shed light on complex allele-specific loci	Expression profiling by high throughput sequencing	Mus musculus	1	BAM TXT	Daniel Andergassen	Feb 03, 2025