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338 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		FPKM_TRACKING
GSE199499	Single-cell chromatin accessibility profiling reveals a self-renewing muscle satellite cell state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	ARROW FPKM_TRACKING RDS	Yarui Diao	Jun 18, 2023
GSE40594	Localization of the Rb tumor suppressor in MEFs during reprogramming to iPS and the consequence of Rb loss on the transcriptional profile and histone landscape in these cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED FPKM_TRACKING WIG SRA Run Selector	Julien Sage	Nov 13, 2014
GSE41785	Global analysis of Upf1 in mESCs reveals expanded scope of nonsense-mediated mRNA decay	Expression profiling by high throughput sequencing Other	Mus musculus	23	BED FPKM_TRACKING SRA Run Selector	Jessica Hurt	Jun 12, 2013
GSE48085	Genome-scale analysis in blood progenitor and mast cells reveals how lineage-affiliated transcription factors control distinct regulatory programs [ChIP-Seq/RNA-Seq Experiments]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BED BEDGRAPH FPKM_TRACKING SRA Run Selector	Felicia Ng	Apr 24, 2014
GSE48086	Genome-scale analysis in blood progenitor and mast cells reveals how lineage-affiliated transcription factors control distinct regulatory programs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	29	BED BEDGRAPH FPKM_TRACKING	Felicia Ng	Apr 24, 2014
GSE73611	Combined loss of Tet1 and Tet2 promotes B-cell, but not myeloid malignancies in mice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	28	BED FPKM_TRACKING SRA Run Selector	Peng Jin	Nov 12, 2015
GSE74055	Histone H3 lysine 4 monomethylation modulates longrange chromatin interactions at enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	153	BED BW FPKM_TRACKING TXT SRA Run Selector	Jian Yan	Jan 09, 2018
GSE80089	Gene expression profiling and genome-wide maps in PDGFB-induced glioma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BED FPKM_TRACKING TXT	Richard Lu	May 17, 2016
GSE81233	Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	673	BED FPKM_TRACKING TXT SRA Run Selector	Hongshan Guo	Dec 19, 2017
GSE82211	The lncRNA genomic landscape of oligodendrocytes reveals myelination control by a lncOL1/Suz12 complex in the CNS	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	11	BED FPKM_TRACKING TXT	Richard Lu	Dec 28, 2016
GSE84924	SALL4 ensures oocytes maturation by modulating DNA methylation and histone modifications	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	37	BED FPKM_TRACKING	Shaorong Gao	Mar 07, 2017
GSE85171	Epigenetic Reprogramming of mutant RAS-driven Rhabdomyosarcoma via MEK Inhibition	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BED CEL FPKM_TRACKING	Javed Khan	Apr 01, 2018
GSE86145	LKB1 loss links the serine metabolic network to DNA methylation and tumourigenesis	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	13	BED FPKM_TRACKING	Rahul Karnik	Oct 24, 2016
GSE86818	Nono, a novel bivalent domain factor, regulates Erk signaling and mouse embryonic stem cell pluripotency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BED BEDGRAPH FPKM_TRACKING	Li Wenjing	Oct 18, 2016
GSE90752	Mechanisms of transcription factor-mediated direct reprogramming of mouse embryonic stem cells to trophoblast stem-like cells	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	BED FPKM_TRACKING TXT SRA Run Selector	Jonghwan Kim	Jul 25, 2017
GSE92985	Reprogramming methods influence DNA methylation and expression patterns of mouse induced pluripotent stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	12	BED FPKM_TRACKING	Jian Hu	Jun 28, 2017
GSE93730	Extensive Functional Redundancy of Mammalian Enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED FPKM_TRACKING	Diane Dickel	Jan 01, 2018
GSE97022	Loss of Asxl2 leads to myeloid malignancies in mice.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED FPKM_TRACKING WIG	yanling sun	Mar 08, 2018
GSE99167	CD4+ T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BED FPKM_TRACKING	Romain Boidot	Oct 02, 2017
GSE99773	Transcriptome analysis of gene expression and single-nucleotide-resolution m6A sites in normal and mettl3 cKO testis samples	Expression profiling by high throughput sequencing Other	Mus musculus	10	BED FPKM_TRACKING	Qi Zhou	Aug 16, 2017