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2744 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus		BW
GSE217745	Aberrant accumulation of Kras-dependent pervasive transcripts during tumor progression renders cancer cells dependent on PAF1 expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BW	Xiangzheng Liu	Nov 01, 2023
GSE164906	"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Genome variation profiling by high throughput sequencing	Mus musculus	476	BW TAB VCF	Yongbing Zhao	Jul 21, 2022
GSE222053	(RNA-seq) Spic regulates one-carbon metabolism and histone methylation in ground-state pluripotency	Expression profiling by high throughput sequencing	Mus musculus	10	BEDGRAPH BW XLSX	Yaser Atlasi	Sep 06, 2023
GSE185619	2cChIP-seq: an efficient and reliable method for epigenomic profiling of small cell numbers and single cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	231	BW TXT	Xiaodong Zhao	Oct 27, 2024
GSE126014	3D Chromosome Structure Can Reveal Stem Cell Signatures	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	21	BW TXT	Ji Wu	Jan 20, 2022
GSE227750	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	150	BW MTX TXT	Yunshun Chen	Sep 08, 2023
GSE244952	3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	25	BW TXT XLS XLSX	Guillermo Barreto	Sep 27, 2024
GSE220303	3D genome remodeling and homologous pairing during meiotic prophase of mouse oogenesis and spermatogenesis	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	44	BW HIC PAIRS TXT	Jing He	Sep 23, 2023
GSE214264	3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	101	BROADPEAK BW CSV NARROWPEAK NCC TSV TXT	David Lando	Jan 19, 2024
GSE103362	4sU-seq analysis for tethering hnRNPK to Xist lacking of XR-PID	Expression profiling by high throughput sequencing	Mus musculus	6	BW	Guifeng Wei	Dec 08, 2017
GSE99924	4sU-seq analysis of Xist-mediated chromosomal silencing	Expression profiling by high throughput sequencing	Mus musculus	47	BW SRA Run Selector	Guifeng Wei	Dec 08, 2017
GSE48519	5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	92	BW TAB TXT SRA Run Selector	Gary Chung Hon	Sep 25, 2014
GSE69143	7SK-BAF axis controls pervasive transcription at enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	74	BW	Ryan Alexander Flynn	Feb 01, 2016
GSE69142	7SK-BAF axis controls pervasive transcription at enhancers [GRO-Seq]	Expression profiling by high throughput sequencing Other	Mus musculus	8	BW SRA Run Selector	Ryan Alexander Flynn	Feb 01, 2016
GSE243286	7SL RNA and SRP orchestrate a global cellular response to acute thermal stress	Expression profiling by high throughput sequencing Other	Mus musculus	28	BW	Hun-Goo Lee	Dec 27, 2024
GSE243284	7SL RNA and SRP orchestrate a global cellular response to acute thermal stress [RNA-seq]	Expression profiling by high throughput sequencing	Mus musculus	8	BW TXT	Hun-Goo Lee	Dec 29, 2024
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE207565	A Bipartate function of ESRRB integrates signaling over time to balance self-renewal and differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BW TSV	Josh M Brickman	Apr 18, 2023
GSE71676	A Co-repressor CBFA2T2 regulates pluripotency and germline development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	18	BW XLSX	Danny Reinberg	Jun 02, 2016
GSE96998	A Comprehensive Roadmap of the Mammalian Ribo-interactome Connects Metabolism Enzymes with Specialized ER-Ribosomes	Expression profiling by high throughput sequencing Other	Mus musculus	6	BW CSV SRA Run Selector	Gerald Tiu	Jun 01, 2017