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47098 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Mus musculus
GSE43013	Gene Expression Defines Natural Changes in Mammalian Lifespan	Expression profiling by high throughput sequencing	Acomys cahirinus Bos taurus Canis lupus familiaris Capra hircus Cavia porcellus Chlorocebus aethiops Equus caballus Erinaceus europaeus Felis catus Meles meles Meriones unguiculatus Mesocricetus auratus Murina leucogaster Mus musculus Oryctolagus cuniculus Peromyscus leucopus Petaurus breviceps Rattus norvegicus Suncus murinus Sus scrofa Tadarida brasiliensis Tamias sibiricus Ursus americanus	141	GTF TXT SRA Run Selector	Alexey Fushan	Feb 17, 2015
GSE71761	Comparing regeneration and fibrosis using Acomys and Mus	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	10	FA TXT XLSX SRA Run Selector	Ashley Seifert	Mar 17, 2016
GSE113081	Comparative Transcriptomic Analysis of Dermal Wound Healing Reveals De Novo Skeletal Muscle Regeneration in Acomys cahirinus	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	24	FASTA TXT SRA Run Selector	Jason Orr Brant	Apr 25, 2019
GSE159938	Symmetry breaking of tissue mechanics in wound induced hair follicle regeneration [bulk RNA-seq]	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	25	TXT SRA Run Selector	Hans I-Chen Harn	Feb 19, 2021
GSE159939	Symmetry breaking of tissue mechanics in wound induced hair follicle regeneration	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	26	TXT	Hans I-Chen Harn	Feb 19, 2021
GSE168876	Spiny mice (Acomys cahirinus) activate unique transcriptional programs after severe kidney injuries and regenerate organ function without fibrosis	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	18	XLSX SRA Run Selector	Daryl Okamura	Sep 13, 2021
GSE182141	A subset of pro-inflammatory spiny mice macrophages promotes a regenerative phenotype in mouse fibroblasts	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	10	MTX TSV SRA Run Selector	Steve Potter	Oct 23, 2023
GSE216723	Injured Mus and Acomys ear tissues at day0 were analyzed using 10X single-cell rna-seq	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	2	MTX TSV	Steve Potter	Jan 23, 2023
GSE224433	An ERK-dependent molecular switch antagonizes fibrosis and promotes regeneration in spiny mice (Acomys)	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	6	H5 TXT	PHILIP LIJNZAAD	Apr 28, 2023
GSE190756	Comparative transcriptomics reveals circadian and pluripotency networks as two pillars of longevity regulation	Expression profiling by high throughput sequencing	Acomys russatus Blarina brevicauda Bramus lutescens Castor canadensis Cavia porcellus Chinchilla lanigera Condylura cristata Cricetulus barabensis Cuniculus paca Fukomys damarensis Heterocephalus glaber Hydrochoerus hydrochaeris Marmota monax Mesocricetus auratus Mus musculus Myocastor coypus Neotoma cinerea Octodon degus Ondatra zibethicus Peromyscus maniculatus Rattus rattus Scalopus aquaticus Sciurus carolinensis Tamias striatus Tamiasciurus hudsonicus	522	TXT SRA Run Selector	jinlong lu	May 18, 2022
GSE84589	Cis-regulatory landscape of four cell types of the retina	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Adeno-associated virus Mus musculus synthetic construct	64	TAB SRA Run Selector	Dirk Schuebeler	Oct 25, 2017
GSE186346	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [Hippocampus]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	25	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE186347	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [P0&P10]	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	44	TXT SRA Run Selector	Joseph Dougherty	Feb 10, 2023
GSE186348	Extensive sex differences in depression-linked variants functionally assayed in mouse brain	Expression profiling by high throughput sequencing Other	Adeno-associated virus 9 Mus musculus	69		Joseph Dougherty	Feb 10, 2023
GSE222184	Extensive sex differences in depression-linked variants functionally assayed in mouse brain [Hippocampus II]	Expression profiling by high throughput sequencing	Adeno-associated virus 9 Mus musculus	38	TXT	Joseph Dougherty	Feb 10, 2023
GSE48809	The metabolic niche of a prominent sulfate-reducing human gut bacterium	Expression profiling by high throughput sequencing Other	Agathobacter rectalis ATCC 33656 Bacteroides caccae ATCC 43185 Bacteroides ovatus ATCC 8483 Bacteroides thetaiotaomicron VPI-5482 Collinsella aerofaciens ATCC 25986 Desulfovibrio piger GOR1 Escherichia coli str. K-12 substr. MG1655 Marvinbryantia formatexigens DSM 14469 Mus musculus [Clostridium] symbiosum	135	TXT	Federico E Rey	Jul 12, 2013
GSE108337	Evidence against tetrapod-wide digit identities and for a limited frame shift in bird wings	Expression profiling by high throughput sequencing	Alligator mississippiensis Anolis carolinensis Mus musculus	59	TXT SRA Run Selector	Cong Liang	Jun 30, 2019
GSE202285	Downstream targets of Isl1 in the hindlimb field and genital tubercle	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Alligator mississippiensis Anolis sagrei Gallus gallus Mus musculus Trachemys scripta	76	BED BW NARROWPEAK TXT	Douglas Menke	Apr 04, 2025
GSE34394	Three Distinct Phases of Regeneration-Specific Gene Expression in the Axolotl Blastema	Expression profiling by high throughput sequencing	Ambystoma mexicanum Mus musculus	20	TXT SRA Run Selector	Jeff Nie	Sep 01, 2013
GSE108493	RNA seq analysis of regenerating hearts from three models of successful cardiac regeneration	Expression profiling by high throughput sequencing	Ambystoma mexicanum Danio rerio Mus musculus	54	FASTA SRA Run Selector	Niranjana Natarajan	Feb 01, 2018