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3259 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			XLS
GSE147440	Identification of m6A residues at single nucleotide resolution using eCLIP and an accessible custom analysis pipeline	Expression profiling by high throughput sequencing	Homo sapiens	17	BAI BAM BED XLS SRA Run Selector	Justin Roberts	Dec 31, 2020
GSE32213	Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin hubs	Expression profiling by high throughput sequencing	Homo sapiens	3	BAM XLS SRA Run Selector	Xun Lan	Jul 01, 2012
GSE32916	Analysis of Pro-Inflammatory Gene Activation and RNA Processing by RNAseq of Nascent Transcripts I	Expression profiling by high throughput sequencing	Mus musculus	15	BAM TXT XLS SRA Run Selector	Stephen Smale	May 03, 2012
GSE33141	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Nrl-/- Retinal Transcriptomes	Expression profiling by high throughput sequencing	Mus musculus	6	BAM TXT XLS SRA Run Selector	HARSHA KARUR RAJASIMHA	Oct 25, 2011
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE19325	Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	9	BED BEDGRAPH XLS SRA Run Selector	Dustin E Schones	Apr 16, 2010
GSE30584	RNA mapping of Drosha deficient cells, chromatin maps of mature T cells, and miRNA profiling of lymphopoiesis	Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	22	BED BEDGRAPH XLS	Mark Chong	Mar 14, 2012
GSE38497	Muscleblind-Like 2 mediated alternative splicing in the developing bain by mRNA sequencing	Expression profiling by high throughput sequencing Other	Mus musculus	9	BED BEDGRAPH PDF XLS SRA Run Selector	Ranjan Batra	Aug 16, 2012
GSE38727	A common set of DNA regulatory elements shapes Drosophila appendages	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	22	BED TXT WIG XLS SRA Run Selector	Daniel J McKay	Nov 07, 2013
GSE41903	TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED TXT XLS SRA Run Selector	Adamandia Kapopoulou	Dec 04, 2012
GSE46207	Impairment of Muscle Regeneration in Muscleblind-like 3 Isoform Knockout Mice	Expression profiling by high throughput sequencing Other	Mus musculus	15	BED BEDGRAPH TXT XLS SRA Run Selector	Ranjan Batra	May 18, 2013
GSE46833	De novo mutations in the genome organizer CTCF cause Intellectual Disability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BED XLS	Jo Huiqing Zhou	Jun 01, 2013
GSE54946	An AR-ERG co-mediated chromatin interactome defines the transcriptional network in prostate cancer cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	8	BED BEDGRAPH TXT XLS SRA Run Selector	Edwin Cheung	Dec 14, 2018
GSE56826	Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	28	BED BEDGRAPH TXT XLS SRA Run Selector	Eneritz Agirre	Sep 29, 2014
GSE57503	Evaluation of RNA amplification and RNA-Seq library preparation protocols for spermatozoa RNA profiling	Expression profiling by high throughput sequencing	Homo sapiens	16	BED XLS SRA Run Selector	Stephen Krawetz	May 09, 2015
GSE59779	Studies of regulation of mouse X inactivation and genes escaping XCI	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Mus musculus x Mus spretus	70	BED BIGWIG GFF PAIR TXT XLS	Xinxian Deng	Feb 20, 2015
GSE65261	Ets-domain transcription factor Ets21c and nuclear receptor Ftz-F1 are novel effectors of JNK promoting tumor malignancy	Expression profiling by high throughput sequencing	Drosophila melanogaster	20	BED TXT XLS XLSX SRA Run Selector	Mirka Uhlirova	Nov 04, 2015
GSE65491	Regulatory RNA Apela Is a Component of a Negative Feedback Loop Regulating p53-Mediated Apoptosis in Embryonic Stem Cells	Expression profiling by high throughput sequencing Expression profiling by array Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BED CEL TXT XLS	Jing Huang	Jun 05, 2015
GSE67322	Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	29	BED TXT XLS SRA Run Selector	yijing zhang	Jan 19, 2016
GSE67516	A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED BW TXT XLS XLSX SRA Run Selector	John Edward Froberg	Jun 19, 2015