GEO Browser - GEO

Series

Samples

Platforms

DataSets

144 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			VCF
GSE118716	Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine resistant breast cancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	40	BB BW HIC TXT VCF	Joanna Achinger-Kawecka	Dec 11, 2019
GSE50990	Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Apis mellifera scutellata	8	BED TXT VCF SRA Run Selector	Pablo Cingolani	Sep 19, 2013
GSE119910	Identification of ADAR3-bound targets in U87 cells	Expression profiling by high throughput sequencing	Homo sapiens	18	BED TXT VCF SRA Run Selector	Todd Lowe	Sep 12, 2019
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE189158	NOMe-HiC: joint profiling of genetic variants, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule	Expression profiling by high throughput sequencing Other	Homo sapiens	12	BED HIC SF VCF SRA Run Selector	Yaping Liu	Feb 28, 2023
GSE217482	Immunoediting instructs tumor metabolic reprogramming to support immune evasion	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	BED BIGWIG TXT VCF	Ping-Chih Ho	Nov 15, 2022
GSE128932	Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	48	BEDGRAPH BW TXT VCF SRA Run Selector	Robert A Martienssen	Mar 13, 2020
GSE148185	Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	275	BEDGRAPH BIGWIG TXT VCF	Gustavo Agustín Ruiz Buendía	Apr 07, 2020
GSE158506	Fat1 deletion promotes hybrid EMT state with enhanced tumor progression, stemness, and metastasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	BEDGRAPH TXT VCF	Yura Song	Dec 04, 2020
GSE228428	Multiomic profiling of in vitro models of endothelial-to-mesenchymal transition reveals endothelial cell subtype is a major determinant of fidelity to observed states in atherosclerosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	BEST H5 MTX TBI TSV VCF	Casey Romanoski	May 03, 2023
GSE178643	Selective advantage of epigenetically disrupted cancer cells via phenotypic inertia	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	167	BIGWIG TXT VCF	Paola Scaffidi	Nov 03, 2022
GSE201056	Integrated epigenomic analysis identifies structural alterations associated with oncogenic gene expression in liposarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	71	BIGWIG BW COOL TXT VCF	Feng Yue	Mar 03, 2023
GSE208367	COMPASS complex inhibition targets the metastasis initiating cell in undifferentiated pleomorphic sarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	BIGWIG TBI VCF	jianhong ou	May 24, 2024
GSE248208	Cooperation between the Hippo and MAPK pathway activation drives acquired resistance to TEAD inhibition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	99	BIGWIG BW MTX NARROWPEAK TSV VCF XLS	Xiaosai Yao	Dec 17, 2024
GSE267330	CRISPR Screening Uncovers a Long-Range Enhancer for ONECUT1 in Pancreatic Differentiation and Links a Diabetes Risk Variant	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	33	BIGWIG BW PAIRS VCF	Samuel Joseph Kaplan	May 14, 2024
GSE159951	XIST modulates mammary stem cell homeostasis and tumor fate	Expression profiling by high throughput sequencing Other	Homo sapiens	53	BROADPEAK TXT VCF	Laia Richart	Jan 01, 2021
GSE222193	Transient loss of Polycomb components induces an epigenetic cancer fate	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Drosophila melanogaster	126	BROADPEAK BW NARROWPEAK TXT VCF	Vincent Loubiere	Feb 28, 2024
GSE241450	Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	119	BROADPEAK BW NARROWPEAK TAB VCF	Salih Topal	Sep 11, 2023
GSE97577	Epigenetic and genetic dissections of UV-induced global gene dysregulation in skin cells through multi-omics analyses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	9	BW CSV VCF SRA Run Selector	Liang Liu	Apr 11, 2017
GSE118725	Systematic Analysis of Transcription Factors Binding to Noncoding Variants	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	11359	BW HIC NARROWPEAK TSV TXT VCF SRA Run Selector	Yunjiang Qiu	Oct 28, 2020