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1168 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			NARROWPEAK
GSE30401	AlleleSeq: Analysis of Allele-Specific Expression and Binding in a Network Framework	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BAM NARROWPEAK TAGALIGN	Joel Rozowsky	Jul 09, 2011
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013
GSE55581	Diet-induced chromatin remodeling in mice livers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	20	BED BEDPE DIFF NARROWPEAK SRA Run Selector	Amy Leung	Jul 17, 2014
GSE56312	Ground state conditions induce rapid reorganization of core pluripotency factor binding that precede global epigenetic reprogramming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	36	NARROWPEAK TDF SRA Run Selector	Michael Johannes Ziller	Aug 05, 2015
GSE60731	Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	63	BED NARROWPEAK TXT SRA Run Selector	Christopher L Frank	Feb 27, 2015
GSE61971	Molecular profiling of mouse Dnmt3a/FLT3-ITD leukemia models	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	56	BED BW NARROWPEAK TXT	Margaret Goodell	May 19, 2016
GSE63287	Kdm5b depletion in embryonic stem cells does not induce intragenic promoters or affect transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BEDGRAPH NARROWPEAK TXT	Andrew Johnston	Mar 21, 2020
GSE64328	Transcriptional Regulationand Chromatin Dynamics inHuman Epithelial Cell Differentiation	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	20	BED CEL NARROWPEAK	Luca Petiti	Apr 04, 2016
GSE65159	Conserved epigenomic signatures between mouse and human elucidate immune basis of Alzheimer's disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BW NARROWPEAK TXT SRA Run Selector	Andreas R Pfenning	Feb 18, 2015
GSE65520	Dynamic regulation of the histone variant H1.0 contributes to intratumor epigenetic and functional heterogeneity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	60	BED BROADPEAK NARROWPEAK	Paola Scaffidi	May 01, 2016
GSE65698	Pluripotent mouse Embryonic Stem Cells and during Retinoic Acid-induced differentiation	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	NARROWPEAK	Michal Stachowiak	May 01, 2015
GSE66961	Identification of in vivo DNA-binding mechanisms of Pax6 and reconstruction of Pax6-dependent gene regulatory networks during lens and forebrain development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	24	BED NARROWPEAK TXT SRA Run Selector	Shira Rockowitz	Jul 09, 2015
GSE67382	BAF controls genome accessibility	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	26	BED BROADPEAK NARROWPEAK TXT SRA Run Selector	Douglas Porter	Nov 12, 2015
GSE67458	The MEF2B Regulatory Network	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	55	CEL NARROWPEAK TXT	Patrick Plettner	Jul 01, 2015
GSE70226	rDNA chromatin interactions in the MYC-driven Eµ-Myc transgenic mouse model of B-cell lymphoma	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	CSV NARROWPEAK TXT	Jeannine Diesch	Feb 06, 2019
GSE71069	Signal-Specific Genomic Regulation of NF-κB by EGFR and IL-1R	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	20	BED BEDGRAPH BW NARROWPEAK TXT SRA Run Selector	George Stark	Jul 01, 2020
GSE71131	The dynamic regulatory genome of Capsaspora owczarzaki and the origin of animal multicellularity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Capsaspora owczarzaki	33	BED BEDGRAPH BROADPEAK NARROWPEAK TXT SRA Run Selector	Arnau Sebe-Pedros	Apr 12, 2016
GSE71667	Regional centromeres in Candida lusitaniae lack pericentromeric heterochromatin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Clavispora lusitaniae	10	NARROWPEAK TXT	Lisha Zhu	Sep 14, 2015
GSE72121	The neuron-specific transcription factor Myt1l represses many non-neuronal fates	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	41	FPKM_TRACKING NARROWPEAK SRA Run Selector	Marius Wernig	Apr 05, 2017
GSE72173	Genome-wide studies reveal novel biological pathways regulated by SIN3 isoforms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	14	BED BEDGRAPH NARROWPEAK	Lori Ann Pile	Jan 09, 2016