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832 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing			FASTA
GSE22393	Genome-wide Measurement of RNA Secondary Structure in Yeast	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	7	FASTA TAB WIG SRA Run Selector	Michael Kertesz	Aug 24, 2010
GSE23316	ENCODE Caltech RNA-seq	Expression profiling by high throughput sequencing	Homo sapiens	36	BED12 BEDGRAPH BOWTIE FASTA PSL RPKM SRA Run Selector	ENCODE DCC	Jul 30, 2010
GSE25747	A Genome-Wide Characterization of New and Drought Stress Responsive MicroRNAs in Populus euphratica	Expression profiling by high throughput sequencing	Populus euphratica	2	FASTA TXT SRA Run Selector	Bosheng Li	Apr 25, 2011
GSE26757	Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Medicago sativa	6	FASTA TXT SRA Run Selector	Sam Yang	Apr 21, 2011
GSE27994	Expressed sequences and polymorphisms in rohu carp (Labeo rohita, Hamilton) revealed by mRNA-seq	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Labeo rohita	2	BAM FASTA	Matthew Baranski	Jan 01, 2013
GSE28039	Evolutionary conservation of phototransduction and clock gene expression in the cave beetle Ptomaphagus hirtus (Coleoptera, Leiodidae)	Expression profiling by high throughput sequencing	Ptomaphagus hirtus	1	FASTA TXT	Bryce Daines	Mar 19, 2011
GSE28509	DCP5, a highly conserved P-body-nucleating protein, regulates multiple small RNA-mediated silencing pathways in Arabidopsis (RNA-seq)	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	FASTA TXT	Qi Zheng	Aug 16, 2013
GSE28524	DCP5, a highly conserved P-body-nucleating protein, regulates multiple small RNA-mediated silencing pathways in Arabidopsis	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	6	FASTA TXT	Qi Zheng	Aug 16, 2013
GSE31132	An RNA-Seq Transcriptome Analysis of Orthophosphate-Deficient White Lupin Reveals Novel Insights into Phosphorus Acclimation in Plants	Expression profiling by high throughput sequencing	Lupinus albus	12	FASTA TXT SRA Run Selector	Sam Yang	Nov 29, 2012
GSE33773	The primary transcriptome of barley (Hordeum vulgare L.) chloroplasts	Expression profiling by high throughput sequencing	Hordeum vulgare	4	BEDGRAPH FASTA SRA Run Selector	Konrad U. Förstner	Nov 23, 2011
GSE34984	Transcriptomic changes in aquaporin PIP1;2 deficient Arabodposis plants	Expression profiling by high throughput sequencing	Arabidopsis thaliana	2	FASTA TXT SRA Run Selector	Marlies Heckwolf	Jan 10, 2015
GSE35631	Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes	Expression profiling by high throughput sequencing Other	Aliivibrio fischeri aquifer metagenome environmental samples environmental samples environmental samples	21	FASTA TXT SRA Run Selector	Giovanni Pilloni	Jul 16, 2012
GSE36959	Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779	Expression profiling by high throughput sequencing	Nannochloropsis oceanica	2	FASTA GFF GTF TXT SRA Run Selector	Guangxi Wu	Apr 04, 2012
GSE39309	Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza rufipogon	4	FA FASTA	Yan chenghai	Aug 10, 2012
GSE40028	The genomic foundation of heterotrophy to photoautotrophy transition in Oleaginous Chlorella	Expression profiling by high throughput sequencing	Auxenochlorella pyrenoidosa	18	FASTA GFF3 SRA Run Selector	Jianhua Fan	Nov 02, 2015
GSE40997	Transcriptome analysis of Dunaliella viridis in response to changes in light duration and temperature	Expression profiling by high throughput sequencing	Dunaliella viridis	88	FASTA TXT SRA Run Selector	Brian Howard	Apr 27, 2015
GSE41844	Global transcriptome analysis of the pH regulator pacC in Colletotrichum gloeosporioides	Expression profiling by high throughput sequencing	Colletotrichum gloeosporioides	2	FASTA GTF XLSX SRA Run Selector	Gilgi Friedlander	Nov 21, 2013
GSE44058	Transcriptome dynamics of the dormancy - growth transition in Douglas-fir needles	Expression profiling by high throughput sequencing	Pseudotsuga menziesii	83	CSV FASTA SRA Run Selector	Richard Cronn	Jun 05, 2013
GSE45431	Transcriptome Sequencing and De Novo Analysis of a Cytoplasmic Male Sterile Line and Its Near-Isogenic Restorer Line in Chili Pepper (Capsicum annuum L.)	Expression profiling by high throughput sequencing	Capsicum annuum	2	FASTA TXT SRA Run Selector	Chen Liu	Jul 03, 2013
GSE49865	Bacterial Argonaute samples the transcriptome to identify foreign DNA	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Cereibacter sphaeroides ATCC 17025 Cereibacter sphaeroides ATCC 17029 Escherichia coli BL21(DE3)	16	FASTA SRA Run Selector	Ivan Olovnikov	Sep 12, 2013