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5420 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Expression profiling by high throughput sequencing			TXT
GSE158435	Single-cell joint detection of chromatin occupancy and transcriptome enables higher-dimensional epigenomic reconstructions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16491	BED BW TXT SRA Run Selector	Haiqing Xiong	Mar 05, 2021
GSE223917	Linking genome structures to functions during lineage specification by simultaneous single-cell Hi-C and RNA-seq simultaneous single-cell Hi-C and RNA-seq	Other Expression profiling by high throughput sequencing	Mus musculus	7895	PAIRS TSV TXT XLSX	Zhiyuan Liu	Jan 31, 2023
GSE162511	Single-cell transcriptome and 3D genome atlas of the developing mouse brain	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	4314	HIC TXT	Longzhi Tan	Jan 07, 2021
GSE207412	Self-renewal and differentiation dynamics of native hematopoietic stem and progenitor cells at single-cell resolution	Expression profiling by high throughput sequencing	Mus musculus	1943	H5 TXT XLSX	Bertie Gottgens	Jun 20, 2023
GSE185378	Multi-omics approaches reveal TNF-mediated inhibition of tissue reparative macrophages is via a gene-selective transcriptional mechanism (scRNA-Seq)	Expression profiling by high throughput sequencing	Mus musculus	1528	TXT SRA Run Selector	Assa Yeroslaviz	Jan 11, 2022
GSE236798	Joint single-cell profiling resolves 5mC and 5hmC and reveals their distinct gene regulatory effects	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	1479	COV TXT	Hao Wu	Jul 13, 2023
GSE249630	Modeling T cell temporal response to cancer immunotherapy rationalize development of combinatorial treatments protocols	Expression profiling by high throughput sequencing	Mus musculus	1372	TXT	Ido Amit	Mar 01, 2024
GSE171588	Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation	Expression profiling by high throughput sequencing	Mus musculus	1293	CSV TXT SRA Run Selector	Jiehui Chen	Aug 15, 2023
GSE120963	Molecular architecture of lineage specification and tissue organization in early mouse embryo	Expression profiling by high throughput sequencing	Mus musculus	954	TXT SRA Run Selector	Guangdun Peng	Aug 08, 2019
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE230792	Cis inhibition of NOTCH1 through JAGGED1 sustains embryonic Hematopoietic stem cell fate [scRNA-seq]	Expression profiling by high throughput sequencing	Mus musculus	860	TXT	Anna Bigas	Jan 22, 2024
GSE214496	DNA methylation restricts default deterministic fates towards neural and germline lineages	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	853	BW TXT	teissandier aurelie	Oct 09, 2023
GSE212336	A spatiotemporal map of the mouse brain reveals white matter tracts as vulnerable foci of aging	Expression profiling by high throughput sequencing	Mus musculus	847	TXT	Oliver Hahn	Apr 17, 2023
GSE120409	A neutropenia-associated transcription factor mutation differentially impacts target genes in the cell-states traversed during granulocyte specification and commitment	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	833	BED H5 TXT	H. Leighton Grimes	Apr 06, 2020
GSE281286	Identification of antigen-presenting cell-T cell interactions driving immune responses to food	Expression profiling by high throughput sequencing Other	Mus musculus	787	MTX RDS RESULTS TAB TSV TXT XLSX	Tiago Castro	Dec 19, 2024
GSE246717	A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain	Expression profiling by high throughput sequencing	Mus musculus	781	CSV TXT XLSX	Cindy van Velthoven	Nov 14, 2023
GSE211395	Simultaneous profiling of chromatin architecture and transcription in single cells	Expression profiling by high throughput sequencing Other	Mus musculus	778	TXT	Jiale Qu	Jul 08, 2023
GSE165539	Next Generation Sequencing Facilitates Quantitative Analysis of B cell Transcriptomes	Expression profiling by high throughput sequencing	Mus musculus	768	FASTA TXT SRA Run Selector	Kosuke Miyauchi	Jan 27, 2021
GSE119945	The dynamic transcriptional landscape of mammalian organogenesis at single cell resolution	Expression profiling by high throughput sequencing	Mus musculus	760	CSV TXT SRA Run Selector	Junyue Cao	Feb 20, 2019
GSE199806	DNA methyltransferases 3A and 3B target specific sequences during mouse gastrulation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	712	CSV TSV TXT XLSX	Amos Tanay	Nov 02, 2022