GEO Browser - GEO

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899 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Expression profiling by high throughput sequencing			H5
GSE120409	A neutropenia-associated transcription factor mutation differentially impacts target genes in the cell-states traversed during granulocyte specification and commitment	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	833	BED H5 TXT	H. Leighton Grimes	Apr 06, 2020
GSE158205	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 NARROWPEAK TBI TSV	Danielle R. Little	Mar 08, 2021
GSE165049	HOTTIP reinforces CTCF-defined TAD boundaries by forming R-loops to drive Wnt/b-catenin target gene expression in AML leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	51	BED H5 MTX TSV TXT SRA Run Selector	Huacheng Luo	Feb 18, 2022
GSE169519	Direct neuronal reprogramming by temporal identity factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BIGWIG H5 LOOM SF TSV TXT SRA Run Selector	Awais Javed	May 04, 2023
GSE183310	Decoding the PITX2 controlled genetic network in atrial fibrillation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 MTX TBI TSV TXT SRA Run Selector	Jeffrey D. Steimle	Apr 28, 2022
GSE185684	Etv2-induced MEF reprogramming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	128	BED BW H5	Daniel Garry	Jan 12, 2022
GSE189210	Parallel single cell multi-omics analysis of neonatal skin reveals transitional fibroblast states that restrict differentiation into distinct fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 MTX TBI TSV SRA Run Selector	Sean Thompson	Nov 24, 2021
GSE198564	An Epigenetic Memory of Inflammation Induces Context-Dependent Lineage Plasticity in the Pancreas with Divergent Phenotypic Outcomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	115	BED BIGWIG BW H5 MTX TSV TXT	Rohit Chandwani	Oct 24, 2023
GSE198730	Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED CSV H5 HIC MTX TBI TSV XLSX	Vittorio Sartorelli	Jul 31, 2022
GSE198775	A genome-wide relay of signalling-responsive enhancers drives hematopoietic specification	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	73	BED BEDGRAPH H5	Peter Keane	Dec 09, 2022
GSE199808	Balanced Control of Thermogenesis by Nuclear Receptor Corepressors in Brown Adipose Tissue	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	33	BED CSV H5	Mitchell Lazar	Jul 27, 2022
GSE211863	Probing cell identity hierarchies by fate titration and collision during direct reprogramming [scRNA-seq & scATAC-seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED H5 H5AD TSV	Bob Hersbach	Sep 16, 2022
GSE211864	Probing cell identity hierarchies by fate titration and collision during direct reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED BIGWIG BROADPEAK H5 LOOM TSV	Bob Hersbach	Sep 16, 2022
GSE222373	TBX5 KO multiome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 TBI TSV	William T. Pu	Aug 11, 2023
GSE222970	Tbx5 maintains atrial identity by regulating an atrial enhancer network	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BED BW CSV H5 TBI TSV TXT	William T. Pu	Aug 11, 2023
GSE224604	Olfactory Sensory Neuron Diversity Beyond OR Genes in mice	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	6	BED CSV H5 MTX TSV	Jin Xu	Sep 02, 2024
GSE230363	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scRNA-seq and scATAC-seq coAssay]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED H5 MTX TBI TSV	E JOHN WHERRY	May 31, 2023
GSE232001	Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation [10X Multiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED CSV H5 TBI TSV	SONIA LAURIE	Sep 14, 2023
GSE232003	Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	38	BED BW CSV H5 NARROWPEAK TBI TSV	SONIA LAURIE	Sep 14, 2023
GSE233955	Control of Embryonic Brown Adipocyte Development by GATA6	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BED BIGWIG H5 MTX TSV	Patrick Seale	Jul 19, 2023