GEO Browser - GEO

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37 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Expression profiling by high throughput sequencing			BED
GSE66092	PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage.	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	32	BED BEDGRAPH TXT SRA Run Selector	Hun-Way Hwang	Feb 19, 2016
GSE67516	A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	42	BED BW TXT XLS XLSX SRA Run Selector	John Edward Froberg	Jun 19, 2015
GSE77788	Phosphatidylinositol 3-Kinase (PI3K) delta blockade increases genomic instability in B cells	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	162	BED TXT SRA Run Selector	Roberto Chiarle	Jan 31, 2017
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE82255	Destabilization of B2 RNA by EZH2 activates the stress response	Other Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	61	BED BW TXT SRA Run Selector	Athanasios Zovoilis	Dec 19, 2016
GSE86464	HNRNPA2B1 regulates alternative RNA processing in the nervous system and accumulates in granules in ALS IPSC-derived motor neurons	Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus	124	BED BW CEL CSV	Gene Yeo	Oct 20, 2016
GSE111205	The bipartite TAD organization of the X-inactivation centre ensures opposing developmental regulation of Tsix and Xist	Other Expression profiling by high throughput sequencing	Mus musculus	73	BED MATRIX TXT SRA Run Selector	Nicolas Servant	May 27, 2019
GSE116649	Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	65	BED BEDGRAPH BW HIC XLS XLSX SRA Run Selector	John Edward Froberg	Oct 31, 2018
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Other Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE131154	Fidelity of translation initiation is required for coordinated respiratory complex assembly	Other Expression profiling by high throughput sequencing	Mus musculus	8	BED WIG SRA Run Selector	Stefan J Siira	Jan 13, 2020
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Mortiz M Gaidt	Jul 01, 2020
GSE158460	Dnmt1 has global de novo methylation activity and is specifically targeted to transposable elements	Other Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	90	BED BW CSV XLSX SRA Run Selector	Helene Kretzmer	Jun 18, 2021
GSE172088	HDAC1 and PRC2 mediate combinatorial control in SPI1/PU.1-dependent gene repression in murine erythroleukaemia.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	69	BED BW	Christel GUILLOUF	Jul 24, 2022
GSE184490	Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development	Other Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	132	BED BEDGRAPH TXT SRA Run Selector	Dominic Owens	Dec 16, 2021
GSE211864	Probing cell identity hierarchies by fate titration and collision during direct reprogramming	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	16	BED BIGWIG BROADPEAK H5 LOOM TSV	Bob Hersbach	Sep 16, 2022
GSE214438	Age-associated chromatin re-organization in progenitor B cells	Other Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	76	BED BEDPE TXT	Yaqiang Cao	Mar 01, 2024
GSE260914	ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	78	BED BW HIC MCOOL TSV TXT	Mikhail Magnitov	Mar 08, 2024
GSE160328	RNMT regulates the CD4 T cell transcriptome and translatome	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	46	BED BEDGRAPH TAB	Alison Galloway	May 13, 2021
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012