GEO Browser - GEO

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401 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Third-party reanalysis			TXT
GSE95797	De novo assembly of Aedes aegypti using Hi-C yields chromosome-length scaffolds	Other Third-party reanalysis	Aedes aegypti Culex quinquefasciatus Homo sapiens	3	FASTA TXT SRA Run Selector	Olga Dudchenko	Mar 24, 2017
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Rhodonia placenta Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE202285	Downstream targets of Isl1 in the hindlimb field and genital tubercle	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Alligator mississippiensis Anolis sagrei Gallus gallus Mus musculus Trachemys scripta	76	BED BW NARROWPEAK TXT	Douglas Menke	Apr 04, 2025
GSE118579	Identification of gene expression logical invariants in Arabidopsis	Expression profiling by array Third-party reanalysis	Arabidopsis Arabidopsis halleri Arabidopsis lyrata subsp. petraea Arabidopsis thaliana Brassica napus		TXT	Debashis Sahoo	Oct 31, 2018
GSE64463	Rate, spectrum, and evolutionary dynamics of spontaneous epimutations	Methylation profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	19	TXT SRA Run Selector	Robert J Schmitz	May 13, 2015
GSE69995	The landscape of gene expression in Arabidopsis	Expression profiling by array Third-party reanalysis	Arabidopsis thaliana		TXT	Eduard Akhunov	Aug 01, 2015
GSE71237	Comparison of low water potential (drought) regulated gene expression in wild type (Col-0) and egr1-1egr2-1 (At3g05640/At5g27930) mutant.	Expression profiling by array Third-party reanalysis	Arabidopsis thaliana	6	CEL TXT	Bhaskara Goivnal Badiger	Oct 08, 2015
GSE71397	Identification of Arabidopsis thaliana PRR9 regulated clock components and circadian outputs through genome-wide binding sites analysis	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	4	BED TXT XLS SRA Run Selector	Tiffany L Liu	Dec 03, 2015
GSE96994	DDM1/Lsh remodelers allow methylation of DNA wrapped in nucleosomes	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	15	BED BW GFF TXT SRA Run Selector	David B. Lyons	Nov 15, 2017
GSE119083	Plant Boolean Implication Network	Expression profiling by array Third-party reanalysis	Arabidopsis thaliana		TXT	Debashis Sahoo	Aug 29, 2018
GSE120668	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin	Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	3	TXT SRA Run Selector	Michael Borg	Mar 17, 2020
GSE125378	Distinct characteristics of Arabidopsis thaliana circular RNAs	Expression profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	9	TXT SRA Run Selector	Sascha Laubinger	Jan 24, 2019
GSE136843	Central clock components modulate plant shade avoidance by directly repressing transcriptional activation activity of PHYTOCHROME-INTERACTING FACTORS	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana		BED TXT WIG	Yu Zhang	Sep 01, 2020
GSE138154	EIN3 positive feedback regulation on EIN2C-mediated histone acetylation and gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis thaliana	16	TXT XLS SRA Run Selector	Hong Qiao	Nov 19, 2020
GSE175954	Comparative study of gene expression in Aspergillus niger solid and submerged growth during sugar beet pulp utilization	Expression profiling by array Third-party reanalysis	Aspergillus niger Aspergillus niger CBS 513.88	8	CEL TXT	Ronald de vries	Aug 04, 2021
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE73107	Cis-encoded sRNAs repress expression of polysaccharide utilization loci in Bacteroides fragilis 638R	Expression profiling by array Third-party reanalysis	Bacteroides fragilis 638R	4	CALLS PAIR TXT	Charles Jeffrey Smith	Jul 22, 2016
GSE26772	In vitro transcriptional profiling of Bacteroides thetaiotaomicron in lactose, galactose and human milk oligosaccharides	Expression profiling by array Third-party reanalysis	Bacteroides thetaiotaomicron Bifidobacterium longum	8	CEL TXT	Angela M Marcobal	Jan 01, 2013
GSE18155	Malignant Germ Cell Tumors Display Common microRNA Profiles Resulting in Global Changes in Expression of mRNA Targets	Expression profiling by array Non-coding RNA profiling by array Third-party reanalysis	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human immunodeficiency virus 1 JC polyomavirus Lymphocryptovirus Merkel cell polyomavirus Rhadinovirus	94	CEL TXT	Matthew Jonathan Murray	Mar 15, 2010
GSE75442	Spatial Differences in Gene Expression in the Bovine Oviduct	Expression profiling by array Third-party reanalysis	Bos taurus	15	CEL TXT	Peadar O'Gaora	Mar 01, 2016