GEO Browser - GEO

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46 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Third-party reanalysis			TSV
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Methylation profiling by high throughput sequencing Third-party reanalysis	Wolfiporia cocos Uncinocarpus reesii Tilletiopsis washingtonensis Syncephalis fuscata Sporobolomyces roseus Spinellus fusiger Saccharomyces cerevisiae Rhodonia placenta Radiomyces spectabilis Pyricularia oryzae KJ201 Pseudogymnoascus destructans Podospora anserina Pleurotus ostreatus Plenodomus lingam Phycomyces blakesleeanus Phanerodontia chrysosporium Parasitella parasitica Neurospora crassa Mixia osmundae Microbotryum lychnidis-dioicae Metarhizium robertsii Lobosporangium transversale Laccaria bicolor Kirkomyces cordensis Heterobasidion irregulare Hesseltinella vesiculosa Fusarium fujikuroi Flammula alnicola Cryptococcus neoformans var. grubii Cordyceps militaris Coprinopsis cinerea Coemansia spiralis Coemansia reversa Clavispora lusitaniae Candidozyma auris Candida albicans Botrytis cinerea Aureobasidium pullulans Aspergillus flavus Agaricus bisporus	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE94418	Transcriptional regulation of tDNA in H9 ESCs	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus Homo sapiens	13	CSV TSV TXT SRA Run Selector	keith e giles	Feb 02, 2020
GSE111902	Compendium of CD8+ T cell Data	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	67	BROADPEAK BW NARROWPEAK TSV TXT SRA Run Selector	Robert Anthony Amezquita	Mar 17, 2018
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus Gallus gallus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE156665	Pancreatic Ppy-expressing gamma-cells display mixed phenotypic traits and adaptive plasticity to engage insulin production	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	12	MTX TSV SRA Run Selector	Marta Perez Frances	Jun 04, 2021
GSE162664	MOCCASIN: A method for correcting for known and unknown confounders in RNA splicing analysis	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus		TSV TXT	PAUL JEWELL	Dec 06, 2020
GSE166775	Single-Cell RNA Sequencing Reveals the Immunological Profiles of Renal Allograft Rejection in mice	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	1	MTX TSV TXT SRA Run Selector	QIXIA SHEN	Jul 21, 2021
GSE197610	The RNA Binding Protein Dead End1 Is Differentially Expressed in Male Germ Cells During Late Gestation and Targets Chromatin Modifiers and Translational Machinery	Expression profiling by high throughput sequencing Other Third-party reanalysis	Mus musculus	34	CLOUPE CSV MTX RDATA SF TSV TXT XLSX	Victor A Ruthig	Oct 18, 2022
GSE205285	Mouse single positive thymocyte bulk RNA-seq from Kmt2d knockout and control littermates.	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	18	BIGWIG TSV TXT	Sarah J Potter	May 03, 2024
GSE241233	RNA-seq analysis of bulk Human and single-cell Musashi2-CreER-MycT58A; R26-LSL-tdTomato Mouse Pancreas ASCP, PDAC, and ACC Tumors	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus Homo sapiens	10	H5 JSON MTX TSV	Nirakar Rajbhandari	Aug 21, 2023
GSE242090	Imaging and multi-omics datasets converge to define different neural progenitor origins for ATRT-SHH subgroups	Expression profiling by high throughput sequencing Third-party reanalysis Methylation profiling by genome tiling array	Mus musculus Homo sapiens	69	IDAT MTX TAB TSV	Mamy Jean de Dieu ANDRIANTERANAGNA	Sep 20, 2023
GSE248775	COVID-19 and influenza infections mediate distinct pulmonary cellular and transcriptomic changes [scRNA-Seq]	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	3	MTX TSV	Jay Kolls	Dec 02, 2023
GSE248778	COVID-19 and influenza infections mediate distinct pulmonary cellular and transcriptomic changes	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	24	MTX TSV	Jay Kolls	Dec 02, 2023
GSE249944	Dysfunction of exhausted T cells is enforced by MCT11-mediated lactate metabolism	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	3	TSV XLS	Greg Delgoffe	Sep 23, 2024
GSE270317	Serine metabolism leverages the integrated stress response to direct stem cell fate during tissue regeneration [scRNA-seq]	Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	2	CSV MTX RDS TSV	Jesse Stephen Swyer Novak	Jun 20, 2024
GSE97009	Widespread activation of antisense transcription of the host genome during Herpes simplex virus 1 infection	Expression profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	58	TSV SRA Run Selector	Emanuel Wyler	Sep 28, 2017
GSE111163	Large-scale expansion of human iPSC-derived skeletal muscle cells for disease modeling and cell-based therapeutic strategies	Expression profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	8	TSV SRA Run Selector	W.W.M. Pijnappel	May 03, 2018
GSE120710	A three-dimensional organoid model recapitulates tumorigenic aspects and drug responses of advanced human retinoblastoma	Expression profiling by high throughput sequencing Third-party reanalysis	Homo sapiens	3	TSV SRA Run Selector	Rossukon Kaewkhaw	Oct 23, 2018
GSE124814	Batch-normalization of cerebellar and medulloblastoma gene expression datasets utilizing empirically defined negative control genes	Expression profiling by array Third-party reanalysis	Homo sapiens		TSV XLSX	Holger Weishaupt	Feb 06, 2019
GSE129326	Treehouse compendium of RNA-Seq gene expression data from tumors	Expression profiling by high throughput sequencing Third-party reanalysis	Homo sapiens		TSV	Olena Morozova Vaske	Apr 03, 2020