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111 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			WIG
GSE80156	A coding sequence-embedded principle governs translational reading frame fidelity	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	7	TAR WIG SRA Run Selector	Ji Wan	Apr 12, 2016
GSE154302	A histone H3K4me1 specific binding protein is involved in RdDM	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	22	BEDGRAPH WIG SRA Run Selector	Jian-Kang Zhu	Mar 08, 2021
GSE63437	A variety of Dicer substrates in human and C. elegans (HEK PAR-CLIP)	Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens	5	WIG SRA Run Selector	Marvin Jens	Nov 20, 2014
GSE63458	A variety of Dicer substrates in human and C. elegans (HEK small RNA)	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	5	WIG SRA Run Selector	Marvin Jens	Nov 20, 2014
GSE43192	ADAR1 forms a complex with Dicer to promote microRNA processing and RNA-induced gene silencing	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	8	BED SAM TXT WIG	Kazuko Nishikura	Apr 25, 2013
GSE203049	AGO2 silences mobile transposons in the nucleus of quiescent cells	Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Mus Mus musculus	32	BW WIG	Joana A Vidigal	Jul 18, 2022
GSE208572	AGO2 silences mobile transposons in the nucleus of quiescent cells [miRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Mus	3	WIG	Joana A Vidigal	Jul 22, 2022
GSE152911	Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	24	BW WIG	Xuemei Chen	Feb 26, 2022
GSE152909	Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	18	BW WIG SRA Run Selector	Xuemei Chen	Feb 26, 2022
GSE111814	Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	83	BEDGRAPH TXT WIG	Xiuren Zhang	Jun 26, 2018
GSE56111	Argonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1	Non-coding RNA profiling by high throughput sequencing	Dictyostelium discoideum	4	WIG SRA Run Selector	Konrad U. Förstner	Dec 04, 2014
GSE77713	Base J represses genes at the end of polycistronic gene clusters in Leishmania major by promoting RNAP II termination [small RNA-seq]	Non-coding RNA profiling by high throughput sequencing	Leishmania major	2	WIG SRA Run Selector	David Reynolds	Sep 26, 2016
GSE136193	Characterizing epigenetic effects of HISTONE DEACETYLASE 6 on DNA methylation, siRNA biogenesis and nucleosome positioning using two hda6 alleles in ros1 background	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	12	WIG SRA Run Selector	Huan ZHONG	Jul 07, 2021
GSE36340	Comparative Profiling of Pseudomonas aeruginosa Strains Reveals Differential Expression of Novel Unique and Conserved Small RNAs	Non-coding RNA profiling by high throughput sequencing	Pseudomonas aeruginosa	4	WIG SRA Run Selector	David Stephen Horner	Jun 04, 2012
GSE50778	Control of agricultural traits by hc-siRNA associated MITEs in rice	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	6	BIGWIG WIG SRA Run Selector	Lianfeng Gu	Feb 04, 2014
GSE38577	CpG islands and GC content dictate nucleosome depletion in a transcription independent manner at mammalian promoters	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	WIG	Romain Fenouil	Jun 12, 2012
GSE38560	CpG islands and GC content dictate nucleosome depletion in a transcription independent manner at mammalian promoters (RNA-seq)	Non-coding RNA profiling by high throughput sequencing	Mus musculus	1	WIG SRA Run Selector	Romain Fenouil	Jun 12, 2012
GSE62590	DNA demethylation by 5-aza-2'-deoxycytidine is imprinted targeted to euchromatin and has limited transcriptional consequences	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	13	TXT WIG	Maria-Paz Ramos	Feb 13, 2015
GSE223865	DOT-1.1 (DOT1L) deficiency in C. elegans leads to small RNA-dependent gene activation	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	14	WIG	Alla Grishok	Feb 02, 2023
GSE223864	DOT-1.1 (DOT1L) deficiency in C. elegans leads to small RNA-dependent gene activation [small RNA, L3]	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	2	WIG	Alla Grishok	Feb 02, 2023