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99 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			FASTA
GSE85104	Gene expression profiling of long non-coding RNAs between rainbow trout strains on plant-based diets	Non-coding RNA profiling by high throughput sequencing	Oncorhynchus mykiss	20	FASTA TXT SRA Run Selector	Jason Abernathy	Apr 10, 2018
GSE70953	MicroRNA profiling in Atlantic killifish (Fundulus heteroclitus)	Non-coding RNA profiling by high throughput sequencing	Fundulus heteroclitus	4	BED FASTA TXT SRA Run Selector	Neelakanteswar Aluru	Jul 20, 2015
GSE268512	Transposon and mRNA are distinguished by piRNA’s pairing and piRNA’s expression levels in Ovarian Somatic Cell.	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	33	BED BEDGRAPH BW CSV FA FASTA GTF TSV TXT	Masaru Ariura	Nov 04, 2024
GSE106238	KSHV oral shedding and plasma viremia result in significant changes in the extracellular tumorigenic miRNA expression profile in patients exposed to malaria	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	17	FASTA TXT SRA Run Selector	Serge Barcy	Feb 09, 2018
GSE236810	Expression of piRNAs and miRNAs in embryonic mouse ovary cells: dysregulation and apoptosis by exposure to Vinclozolin and MEHP	Non-coding RNA profiling by high throughput sequencing	Mus musculus	48	FASTA XLSX	Odei Barreñada	Jul 17, 2023
GSE54111	Characterization of the small RNA content of Trypanosoma cruzi extracellular vesicles	Non-coding RNA profiling by high throughput sequencing	Trypanosoma cruzi	3	FASTA SRA Run Selector	Ethel Bayer-Santos	Jul 15, 2014
GSE178127	The Integrator complex regulates microRNA abundance through RISC loading	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	190	BED BW FASTA GTF TSV XLSX SRA Run Selector	Felipe Beckedorff	Feb 14, 2023
GSE203279	The histone demethylase KDM3 prevents auto-immune piRNAs production in Drosophila	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	50	BIGWIG FASTA TXT	Antoine Boivin	Feb 07, 2023
GSE78993	Demonstration of novel piRNA production in chromosome-fusion containing Oxytricha	Non-coding RNA profiling by high throughput sequencing Third-party reanalysis	Oxytricha trifallax Sterkiella histriomuscorum	1	FA FASTA SAM SRA Run Selector	John Russell Bracht	Jun 18, 2016
GSE30583	Expression data from rice leaves treated or not with fungal elicitors and high-throughput pyrosequencing of endogenous small RNAs from Oryza sativa	Expression profiling by array Non-coding RNA profiling by high throughput sequencing	Oryza sativa Oryza sativa Japonica Group	20	CEL FASTA SRA Run Selector	Sonia Campo	Jan 15, 2014
GSE195700	miRNA expression of Pinus pinaster roots under ammonium nutrition	Non-coding RNA profiling by high throughput sequencing	Pinus pinaster	21	FASTA TXT	Rafael A Cañas	Jan 31, 2022
GSE104763	Deep sequencing of olive (Olea europaea l.) Short RNAs identifies microRNAs targeting involved in drupe ripening	Non-coding RNA profiling by high throughput sequencing	Olea europaea	4	FASTA SRA Run Selector	Fabrizio Carbone	Aug 11, 2019
GSE27699	Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	2	FASTA	Chong-Jian CHEN	Mar 07, 2011
GSE39308	Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication [small RNA]	Non-coding RNA profiling by high throughput sequencing	Oryza rufipogon	3	FASTA SRA Run Selector	Yan chenghai	Aug 10, 2012
GSE39309	Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza rufipogon	4	FA FASTA	Yan chenghai	Aug 10, 2012
GSE61386	A Y-chromosome-encoded small RNA acts as sex determinant in persimmons	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Diospyros lotus	24	FASTA TXT SRA Run Selector	Luca Comai	Nov 04, 2014
GSE171980	RNA silencing by CRISPR in plants does not require Cas13	Non-coding RNA profiling by high throughput sequencing Other	Nicotiana benthamiana	24	CSV FASTA TXT SRA Run Selector	David E Cook	Dec 07, 2021
GSE143169	Novel, abundant Drosha isoforms are deficient in miRNA processing in cancer cells	Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens	20	FASTA TXT SRA Run Selector	Lisheng Dai	Jan 01, 2022
GSE90065	shRNA screen identifies lncRNAs required for acute myeloid leukemia progresion	Non-coding RNA profiling by high throughput sequencing	synthetic construct	81	FASTA XLS SRA Run Selector	M Joaquina Delas	Sep 18, 2017
GSE71056	Small RNA deep sequencing identifies viral microRNAs during malignant catarrhal fever induced by alcelaphine herpesvirus 1	Non-coding RNA profiling by high throughput sequencing	Bos taurus	1	FASTA TAR SRA Run Selector	Benjamin G Dewals	Aug 27, 2015