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298 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			BW
GSE88774	Transcriptional and chromatin changes accompanying de novo formation of transgenic piRNA clusters	Other Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	3	BW TXT SRA Run Selector	Sergei Ryazansky	Jan 24, 2018
GSE181684	5’ half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Danio rerio	19	BW	Anming Meng	Aug 25, 2021
GSE147253	5’ half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos [small RNA-Seq, ssDRIP-seq]	Non-coding RNA profiling by high throughput sequencing Other	Danio rerio	13	BW TXT XLSX SRA Run Selector	Anming Meng	Aug 25, 2021
GSE256240	A DGCR8/FLII-dominated on-off switch for immediate-early genes governs embryo implantation in mouse and human [eCLIP]	Non-coding RNA profiling by high throughput sequencing	Mus musculus	16	BW	Xuehui Lv	Jul 08, 2024
GSE233781	A conserved Pol II elongator SPT6L mediates Pol V transcription to regulate RNA-directed DNA methylation in Arabidopsis	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	41	BW	Chen Chen	Apr 22, 2024
GSE98707	A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Danio rerio Mus musculus	9	BW TXT SRA Run Selector	Yuvia Alheli Perez Rico	Jan 14, 2018
GSE247156	A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila ananassae Drosophila erecta Drosophila melanogaster Drosophila simulans Drosophila yakuba	138	BED BROADPEAK BW NARROWPEAK	Susanne Bornelöv	Apr 18, 2025
GSE247155	A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	17	BW	Susanne Bornelöv	Apr 18, 2025
GSE271796	A functional connection between the Microprocessor and a variant NEXT complex	Non-coding RNA profiling by high throughput sequencing	Mus musculus	6	BW	Katsutoshi Imamura	Apr 01, 2025
GSE149893	A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence	Non-coding RNA profiling by high throughput sequencing	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	6	BW SRA Run Selector	Florian Eggenhofer	Nov 17, 2020
GSE97719	A heterochromatin-dependent transcription machinery drives piRNA expression	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	43	BW SRA Run Selector	Peter Andersen	Apr 26, 2017
GSE126578	A heterochromatin-specific RNA export pathway facilitates piRNA production	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	44	BW SRA Run Selector	Peter Andersen	Mar 28, 2019
GSE162318	A virus-derived microRNA targets immune response genes during SARS-CoV-2 infection	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	44	BW	Germano Cecere	Nov 20, 2021
GSE162317	A virus-derived microRNA targets immune response genes during SARS-CoV-2 infection [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	16	BW SRA Run Selector	Germano Cecere	Nov 20, 2021
GSE203049	AGO2 silences mobile transposons in the nucleus of quiescent cells	Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Mus Mus musculus	32	BW WIG	Joana A Vidigal	Jul 18, 2022
GSE233874	ALTERED MERISTEM PROGRAM1 impairs RNA silencing through repressing the biogenesis of inverted repeats-derived siRNAs in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	8	BW TXT	Ye Xu	Jan 02, 2025
GSE233873	ALTERED MERISTEM PROGRAM1 impairs RNA silencing through repressing the biogenesis of inverted repeats-derived siRNAs in Arabidopsis [small RNA-seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	6	BW	Ye Xu	Jan 02, 2025
GSE136967	Ac4ManNAz enriched small RNAs	Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens	4	BW SRA Run Selector	Ryan Alexander Flynn	Sep 30, 2019
GSE267971	Activated RNAi does not rescue piRNA pathway deficiency in testes	Non-coding RNA profiling by high throughput sequencing	Mus musculus	9	BW	Filip Horvat	May 21, 2025
GSE276617	Adaptive evolution of KoRV-A retroviral silencing in wild koalas [small RNA-seq]	Non-coding RNA profiling by high throughput sequencing	Phascolarctos cinereus	16	BW	Tianxiong Yu	Feb 20, 2025