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93 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Non-coding RNA profiling by high throughput sequencing			TXT
GSE249786	Mitochondrial RNA-seq and total RNA-seq of 293T, HeLa, and N2a cells; RIP-seq of SUPV3L1, ceSUPV3L1, ATP5B, and TRAP1; Small RNA-seq of 293T mitochondrial fractions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans Homo sapiens Mus musculus	36	BW CSV TXT	Xu Liu	Dec 19, 2023
GSE144666	PANDORA-seq: expanding the small RNA repertoire by overcoming RNA modifications	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	201	TXT SRA Run Selector	Junchao Shi	Feb 16, 2021
GSE150107	miR-200b/200a/429 cluster prevents metastasis and induces dormancy in murine claudin-low mammary tumor cells	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	48	TXT	Roger Moorehead	May 08, 2020
GSE172146	Aberrant translation regulation by METTL1/WDR4-mediated tRNA N7-methylguanosine modification drives HNSCC progression	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	28	H5 TXT SRA Run Selector	Jie Chen	Mar 23, 2022
GSE184338	Systematic characterization of seed overlap microRNA cotargeting associated with lupus pathogenesis	Expression profiling by high throughput sequencing Non-coding RNA profiling by array Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	26	TXT	Hiroshi I. Suzuki	Oct 14, 2022
GSE198390	LIS1 RNA-binding orchestrates the mechanosensitive properties of embryonic stem cells in AGO2-dependent and independent ways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	166	BEDGRAPH TXT	Orly Reiner	May 04, 2023
GSE205632	Zika virus co-opts miRNA networks to persist in placental microenvironments detected by spatial transcriptomics	Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	17	H5 JPG PNG TXT	Michael Jochum	Jun 03, 2023
GSE206859	LDL delivery of microbial small RNAs drives atherosclerosis through macrophage TLR8	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	50	TXT	Ryan M Allen	Jun 25, 2022
GSE226714	single-cell miRNA and mRNA cosequencing using PSCSR-seq V2	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TXT	Tao Cai	Jan 10, 2025
GSE234687	A snoRNA–tRNA modification network governs codon-biased cellular states [RNAseq & Riboseq]	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	48	TXT	Minjie Zhang	Sep 21, 2023
GSE234689	A snoRNA–tRNA modification network governs codon-biased cellular states	Other Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	69	TXT	Minjie Zhang	Sep 21, 2023
GSE235136	Trimannose-coupled antimiR-21 for macrophage-targeted inhalation treatment of acute inflammatory lung damage	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	151	CSV TXT	Stefan Engelhardt	Jul 12, 2023
GSE239810	Mitochondrial signals mediate paternal effects on offspring metabolism (small RNA-Seq)	Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	44	TXT	Raffaele Teperino	Apr 03, 2024
GSE239815	Epigenetic inheritance of diet-induced and sperm-borne mitochondrial RNAs	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	307	MTX TSV TXT	Raffaele Teperino	Apr 03, 2024
GSE133600	The RNA N6-methyladenosine regulates chromatin remodeling and transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	122	NARROWPEAK TXT	Xiaoyang Dou	Jan 17, 2020
GSE136346	Identification of Ankrd35 as a mediator of cisplatin response in non-small cell lung cancer by ex vivo 3D screening of primary tumor spheroids	Expression profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	412	TXT	David Simpson	Nov 11, 2021
GSE139653	Comprehensive analysis of circRNA expression profiles and circRNA-associated ceRNA networks in age-related changes of mouse thymus	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	Wen Ting Li	Jun 22, 2020
GSE156879	Small-hairpin RNAs cause target-independent microRNA dysregulation in neurons and elicit global transcriptomic changes (miRNA-seq)	Non-coding RNA profiling by high throughput sequencing	Mus musculus	16	TXT SRA Run Selector	Michigan CDB Bioinformatics	Dec 31, 2020
GSE160012	Identification of translational ncRNA biomarker candidates for nano-polystyrene induced brain injury using next-generation sequencing	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Mus musculus	6	TXT SRA Run Selector	chu chen	Oct 02, 2023
GSE161978	Genetic regulator of mitochondrial metabolism and insulin resistance [ncRNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Mus musculus	6	CSV TXT SRA Run Selector	Stefan J Siira	Sep 24, 2021