GEO Browser - GEO

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60 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Homo sapiens		TSV
GSE148448	Self-reporting transposons enable simultaneous readout of gene expression and transcription factor binding in single cells	Other	Homo sapiens Mus musculus	27	BAM CSV LOOM TSV TXT SRA Run Selector	Robi D Mitra	Jul 23, 2020
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE162739	BAP1 activity regulates Polycomb occupancy and global chromatin condensation counteracting diffuse PCGF3/5-dependent H2AK119ub1 deposition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	192	BED RPKM TSV TXT SRA Run Selector	Federico Rossi	Jun 27, 2021
GSE165049	HOTTIP reinforces CTCF-defined TAD boundaries by forming R-loops to drive Wnt/b-catenin target gene expression in AML leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	51	BED H5 MTX TSV TXT SRA Run Selector	Huacheng Luo	Feb 18, 2022
GSE174226	High-content single-cell combinatorial indexing	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	6	BED CSV RDS TSV TXT SRA Run Selector	Ryan M Mulqueen	May 28, 2021
GSE174554	A single cell atlas of human glioma under therapy	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	113	BED MTX TAR TSV TXT ZIP	Aaron Diaz	Jul 05, 2022
GSE198250	High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	188	BED BW TSV	Gene Yeo	Jul 30, 2022
GSE198251	High depth profiling of miRNA targets with chimeric eCLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	204	BED BW TSV	Gene Yeo	Jul 29, 2022
GSE211178	The hyperconnected 3D clique at the Ets1 locus is required for T cell function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	67	BED HIC TSV	Golnaz Vahedi	Jun 20, 2023
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE240014	An in situ method for identification of transcriptome-wide protein-RNA interactions in cells [in_situ_STAMP]	Other	Homo sapiens Mus musculus	39	BED TSV	Brian Yee	Jun 13, 2024
GSE240326	An in situ method for identification of transcriptome-wide protein-RNA interactions in cells	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BED BW TSV	Brian Yee	Jun 13, 2024
GSE269258	HoxBlinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	61	BED BIGWIG BW HIC MTX NARROWPEAK TABULAR TSV	Suming Huang	Jan 31, 2025
GSE241338	Genome-wide interference of chromatin architecture and Mediator in transcriptional bursting and gene network regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	250	BEDGRAPH BW CSV MTX TSV	Seolkyoung Jung	Jun 30, 2024
GSE224832	Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis.	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	104	BIGWIG TSV	Moritz Mall	Dec 18, 2024
GSE169102	DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	187	BW COV MTX TSV TXT	Guoping Fan	May 05, 2025
GSE175803	m6Am RNA methyltransferases PCIF1 regulate tumorigenesis of colorectal cancer and its immune responses to anti-PD-1 therapy	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	26	BW CSV TSV TXT SRA Run Selector	Lingling Wang	Nov 12, 2022
GSE184757	Study of 5mC-DNA, m6A-RNA and RNA-expression in HeLa, ES and EB	Methylation profiling by genome tiling array Other Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	306	BW IDAT TSV TXT	Martin Bizet	Jan 10, 2025
GSE198517	Inhibition of SWI/SNF broadly disrupts enhancers and reveals remodeler redundancy at promoters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	107	BW TSV XLSX	Karen Adelman	Nov 02, 2023
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023