Capturing pairwise and multi-way chromosomal conformations using C-walks

RNA duplex map in living cells reveals higher order transcriptome structure

High-throughput single-base resolution mapping of 2’-O-Methylated residues

OmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors

CAPTURE-3C-seq analysis of cis-element-mediated long-range DNA interactions

Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators

Episomal HBV persistence within transcribed host nuclear chromatin compartments involves HBx

The energetics and physiological impact of cohesin extrusion

Higher-order inter-chromosomal hubs shape 3-dimensional genome organization in the nucleus

Single-molecule nascent RNA sequencing reveals regulatory domain architecture ant promoters and enhancers

A compendium of conserved cleavage and polyadenylation events in mammalian genes

Determination of branch point (BP) usage by wild-type and mutant SF3B1 using a minigene library

Saturation mutagenesis of disease-associated regulatory elements

Transcriptome Mapping of Internal N7-methylguanosine Methylome in Mammalian mRNA

Satb1 integrates DNA sequence, shape, motif density and torsional stress to selectively bind a subset of putative targets in nucleosome-dense regions of the genome

NET-CAGE Characterizes the Dynamics and Topology of Human Transcribed Cis-regulatory Elements

Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart

Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA

Control of noncoding RNA production and histone levels by a 5’ tRNA fragment

In situ capture of global transcription dynamics and enhancer activity with high accuracy and sensitivity