GEO Browser - GEO

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134 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other	Homo sapiens
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE85164	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	90	BED BIGWIG	Asifa Akhtar	Mar 28, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE185930	Distinct roles of CKM-Mediator in controlling Polycomb-dependent chromosomal interactions and priming genes for induction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	148	TXT	Emilia Dimitrova	May 23, 2022
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE199805	A CpG island-encoded mechanism protects genes from premature transcription termination	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	124		Emilia Dimitrova	Dec 21, 2022
GSE188639	A single-cell massively parallel reporter assay detects cell type specific cis-regulatory activity	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	19	CSV MTX TSV	SIQI ZHAO	Nov 11, 2021
GSE217690	Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	368		Jean-Benoit Lalanne	Dec 11, 2022
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gorilla gorilla Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE69143	7SK-BAF axis controls pervasive transcription at enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	74	BW	Ryan Alexander Flynn	Feb 01, 2016
GSE73065	High-throughput single-base resolution mapping of 2’-O-Methylated residues	Other	Homo sapiens Mus musculus	15	BEDGRAPH SRA Run Selector	Danny Incarnato	Sep 13, 2016
GSE74353	RNA duplex map in living cells reveals higher order transcriptome structure	Other	Homo sapiens Mus musculus	14	TXT SRA Run Selector	Zhipeng Lu	Apr 04, 2016
GSE76420	LncRNA DINO guides DNA damage signaling	Expression profiling by array Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	56	BED NARROWPEAK	Adam Schmitt	Dec 30, 2015
GSE77328	OmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	44	TXT WIG SRA Run Selector	Martin Eilers	Oct 18, 2016
GSE77553	Capturing pairwise and multi-way chromosomal conformations using C-walks	Other	Homo sapiens Mus musculus	20	TXT SRA Run Selector	Pedro Olivares-Chauvet	Feb 04, 2016
GSE80154	Enhancer invasion shapes MYCN dependent transcriptional amplification in neuroblastoma	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	144	BEDGRAPH CEL WIG	James Bradner	Jan 29, 2018
GSE88817	In situ CAPTURE of chromatin interactions by biotinylated dCas9	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	175	BED WIG	Jian Xu	Aug 24, 2017
GSE95374	Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	104	BW TXT SRA Run Selector	Nian Liu	Dec 06, 2017