GEO Browser - GEO

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DataSets

133 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other	Homo sapiens
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE148448	Self-reporting transposons enable simultaneous readout of gene expression and transcription factor binding in single cells	Other	Homo sapiens Mus musculus	27	BAM CSV LOOM TSV TXT SRA Run Selector	Robi D Mitra	Jul 23, 2020
GSE164779	Hierarchical chromatin regulation during blood formation uncovered by single-cell sortChIC	Other	Homo sapiens Mus musculus	106	BAM CSV TXT SRA Run Selector	Jake Yeung	Nov 30, 2021
GSE76420	LncRNA DINO guides DNA damage signaling	Expression profiling by array Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	56	BED NARROWPEAK	Adam Schmitt	Dec 30, 2015
GSE85164	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	90	BED BIGWIG	Asifa Akhtar	Mar 28, 2017
GSE88817	In situ CAPTURE of chromatin interactions by biotinylated dCas9	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	175	BED WIG	Jian Xu	Aug 24, 2017
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE100733	LRPPRC-mediated folding of the mitochondrial transcriptome	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	28	BED BEDGRAPH TXT	Stefan J Siira	Nov 21, 2017
GSE112276	Transcriptome Mapping of Internal N7-methylguanosine Methylome in Mammalian mRNA	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	104	BED FPKM_TRACKING TXT XLSX SRA Run Selector	Li-Sheng Zhang	Apr 26, 2019
GSE115096	HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BED TXT SRA Run Selector	Huacheng Luo	Jan 27, 2021
GSE118075	NET-CAGE Characterizes the Dynamics and Topology of Human Transcribed Cis-regulatory Elements	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	144	BED SRA Run Selector	Shruti Bhagat	Jun 10, 2019
GSE127247	Control of noncoding RNA production and histone levels by a 5’ tRNA fragment	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	48	BED XLSX SRA Run Selector	Mike Levine	Jan 17, 2020
GSE134798	Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens Mus musculus	34	BED BEDGRAPH NARROWPEAK	Jose Manuel Garcia-Manteiga	Jul 07, 2020
GSE139117	Analysis of CRE-mediated chromatin interactions by CAPTURE2.0	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	105	BED BW WIG	Jian Xu	Feb 20, 2020
GSE139420	In situ capture of global transcription dynamics and enhancer activity with high accuracy and sensitivity	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BED BIGWIG XLS SRA Run Selector	Ruitu Lyu	Feb 15, 2020
GSE143963	HRI activates ATF4 to promote BCL11A transcription and fetal hemoglobin silencing	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	23	BED BW	Peng Huang	Apr 17, 2020
GSE145598	Genome-wide detection of DNA double-strand breaks by in-suspension BLISS	Other	Homo sapiens Mus musculus	10	BED SRA Run Selector	Federico Agostini	Sep 30, 2020
GSE163491	Deep and accurate detection of m6A RNA modifications in human and mouse cells using miCLIP2 and m6Aboost machine learning [a]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	22	BED BW TXT SRA Run Selector	Kathi Zarnack	Jun 05, 2021
GSE164360	Epigenomic Activation of Enhancers in Granule Cell Precursors by CHARGE Syndrome Protein CHD7 Regulates Gyrification of the Mammalian Cerebellum	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	104	BED TXT XLSX SRA Run Selector	Naveen Reddy	Apr 07, 2021
GSE171599	MacroH2A histone variants modulate enhancer activity to repress oncogenic programs and cellular reprogramming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	44	BED BIGWIG BW H5 SRA Run Selector	Alexandre Gaspar-Maia	Feb 21, 2023