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25 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Escherichia coli		TSV
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE148595	pAgo-induced DNA interference protects bacteria from invader DNA [smDNA]	Other	Escherichia coli	26	BEDGRAPH TSV SRA Run Selector	Anton Kuzmenko	Jul 30, 2020
GSE148596	pAgo-induced DNA interference protects bacteria from invader DNA	Other	Escherichia coli	36	BEDGRAPH TSV	Anton Kuzmenko	Jul 30, 2020
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023
GSE164308	Landscape of transcriptional and translational changes over 22 years of bacterial adaptation	Expression profiling by high throughput sequencing Other	Escherichia coli	8	CSV TSV SRA Run Selector	Premal Shah	Jan 12, 2021
GSE165412	Massively parallel characterization of CYP2C9 variant enzyme activity and abundance	Other	Escherichia coli Homo sapiens Saccharomyces cerevisiae	12	CSV TSV SRA Run Selector	Clara Amorosi	Mar 13, 2021
GSE188639	A single-cell massively parallel reporter assay detects cell type specific cis-regulatory activity	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	19	CSV MTX TSV	SIQI ZHAO	Nov 11, 2021
GSE190495	Drug resistance profiling of thousands of Src kinase mutants uncovers a regulatory network that couples autoinhibition to catalytic domain dynamics	Other	Escherichia coli Saccharomyces cerevisiae	5	CSV TSV TXT SRA Run Selector	Douglas Fowler	Dec 17, 2021
GSE216481	A Transcription Factor Atlas of Directed Differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Lentivirus	281	CSV MTX TSV	Julia Joung	Jan 05, 2023
GSE183061	Identification of collateral RNA cleavage mediated by Type VI CRISPR-Cas system from Leptotrichia shahiii	Other	Escherichia coli	30	FASTA TSV SRA Run Selector	Matvei Kolesnik	Aug 31, 2022
GSE254843	Experimental tests strongly challenge the evidence of a healthy human blood microbiome	Other	Escherichia coli Mus musculus human blood metagenome	15	FASTA TSV TXT	Matteo Ramazzotti	Mar 01, 2024
GSE104303	Chaperone saturation mediates translation and protein folding efficiency	Other Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	30	TSV SRA Run Selector	Vincent J Hilser	Oct 27, 2024
GSE105112	Structural characterization of ribosome variants	Other	Escherichia coli	12	TSV SRA Run Selector	Boris Zinshteyn	Oct 03, 2018
GSE108727	Assessment of Variant Abundance by Massively Parallel Sequencing for PTEN and TPMT	Other	Escherichia coli Homo sapiens	20	TSV XLS SRA Run Selector	Kenneth Matreyek	Mar 13, 2018
GSE113529	Assaying RNA Structure with LASER-seq	Other	Escherichia coli Homo sapiens Saccharomyces cerevisiae	37	TSV SRA Run Selector	Boris Zinshteyn	Oct 16, 2018
GSE157014	4U-DMS-MaP probing of nascent ribosomes	Other	Escherichia coli	13	TSV TXT SRA Run Selector	Yumeng Hao	Aug 28, 2020
GSE163855	Identification of functional regulatory variants implicates distinct transcriptional networks in dementia	Other	Escherichia coli Homo sapiens	23	TSV TXT SRA Run Selector	Yonatan Ariel Cooper	Dec 25, 2020
GSE190759	Mutational analysis of Rap1 reveals specific vulnerability for long telomeres fusions	Other	Escherichia coli Schizosaccharomyces pombe	17	TSV XLS SRA Run Selector	Peter Baumann	Aug 10, 2022
GSE196016	Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing	Other	Escherichia coli Homo sapiens	29	TSV	Tao Pan	Jun 22, 2022
GSE200694	Specific targeting of plasmids with Argonaute enables genome editing	Other	Escherichia coli	15	TSV	Anastasiia Okhtienko	Apr 17, 2022