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65 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	synthetic construct		TSV
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE256215	Aberrant homeodomain-DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	32	BIGWIG NARROWPEAK TSV TXT	Shiming Chen	Nov 22, 2024
GSE180158	Sequence determinants of human gene regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	80	BROADPEAK NARROWPEAK TSV TXT	Teemu Kivioja	Nov 12, 2021
GSE118725	Systematic Analysis of Transcription Factors Binding to Noncoding Variants	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	11359	BW HIC NARROWPEAK TSV TXT VCF SRA Run Selector	Yunjiang Qiu	Oct 28, 2020
GSE218472	Enhancer grammar of liver cell types and hepatocyte zonation states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	79	BW TSV	Carmen Bravo Gonzalez-Blas	Sep 07, 2023
GSE218977	The anti-cancer compound JTE-607 reveals hidden sequence specificity of the mRNA 3' processing machinery	Other	Homo sapiens synthetic construct	18	BW TSV	Yongsheng Shi	Jul 22, 2023
GSE229586	Unbiased transcription factor CRISPR screen identifies ZNF800 as master repressor of enteroendocrine differentiation.	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens synthetic construct	20	BW MTX TSV TXT	Jeff DeMartino	Oct 26, 2023
GSE197501	Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus synthetic construct	52	CSV MTX RDS TSV TXT XLSX	Alex Chialastri	Aug 07, 2023
GSE239954	Characterization of group I introns in generating circular RNAs as vaccines	Expression profiling by high throughput sequencing Other	synthetic construct	39	CSV TSV	Roland G Huber	Mar 12, 2025
GSE246151	Enhanced detection of RNA modifications with high-accuracy nanopore RNA basecalling models	Other	Arabidopsis thaliana Homo sapiens Mus musculus Saccharomyces cerevisiae Xenopus laevis synthetic construct	70	CSV FA FASTA TSV TXT	Gregor Diensthuber	Aug 26, 2024
GSE253580	Deep mutational scanning quantifies DNA binding and predicts clinical outcomes of PAX6 variants	Other	Saccharomyces cerevisiae synthetic construct	15	CSV TSV	Grzegorz Kudla	Mar 21, 2024
GSE266690	Single cell approaches define neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination	Expression profiling by high throughput sequencing Other	Mus musculus synthetic construct	33	CSV MTX PNG TIFF TSV TXT ZIP	Freda D. Miller	Dec 19, 2024
GSE278581	CRISPR-CLEAR: Nucleotide-Resolution Mapping of Regulatory Elements via Allelic Readout of Tiled Base Editing	Other	Homo sapiens synthetic construct	49	CSV TSV	Eric Che	Oct 03, 2024
GSE221924	PFKFB3 overexpression in monocytes of patients with colon but not rectal cancer programs pro-tumor macrophages and is indicative for higher risk of tumor relapse [GeoMx]	Other	Homo sapiens synthetic construct	99	DCC TSV	Irina Larionova	Dec 31, 2022
GSE183301	Inherited functional regulatory risk variants for common human cancers [MPRA]	Other	Homo sapiens synthetic construct	50	FA TSV SRA Run Selector	Paul Khavari	Aug 22, 2024
GSE256185	Quantitative profiling of human translation initiation reveals elements that potently regulate endogenous and therapeutically modified mRNAs	Other	Homo sapiens synthetic construct	19	FA TSV	Carson Thoreen	Dec 19, 2024
GSE155910	TRACE-Seq Reveals Clonal Reconstitution Dynamics of Gene Targeted Human Hematopoietic Stem Cells	Other	Homo sapiens synthetic construct	89	FASTA TSV SRA Run Selector	Ravindra Majeti	Aug 09, 2020
GSE130117	Simultaneous measurement of DNA repair activities and mRNA abundance in single cells	Expression profiling by high throughput sequencing Other	Homo sapiens synthetic construct	22	MTX TSV TXT SRA Run Selector	Jay R. Hesselberth	Oct 02, 2019
GSE169706	Seq-Scope: Submicrometer-resolution spatial barcoding technology that enables microscopic examination of tissue transcriptome at single cell and subcellular levels	Other	Mus musculus synthetic construct	4	MTX TSV SRA Run Selector	Jun Hee Lee	Apr 19, 2021
GSE185666	Dual Chromatin Repressors Regulate Hippocampal Development	Expression profiling by high throughput sequencing Other	Mus musculus synthetic construct	2	MTX TSV SRA Run Selector	Kai-Chun Chang	Feb 01, 2022