GEO Browser - GEO

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1138 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Mus musculus		BW
GSE219068	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment	Other	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	356	BW	Changbin Sun	Jun 11, 2024
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE45242	HoxD locus	Other Genome binding/occupancy profiling by genome tiling array Expression profiling by genome tiling array Expression profiling by high throughput sequencing	Atelerix albiventris Mus musculus	32	BAR BED BEDGRAPH BW CEL	Marion LELEU	Oct 23, 2013
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE249786	Mitochondrial RNA-seq and total RNA-seq of 293T, HeLa, and N2a cells; RIP-seq of SUPV3L1, ceSUPV3L1, ATP5B, and TRAP1; Small RNA-seq of 293T mitochondrial fractions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans Homo sapiens Mus musculus	36	BW CSV TXT	Xu Liu	Dec 19, 2023
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE275291	Reconstitution of SPO11-dependent double-strand break formation	Other	Cloning vector pUC19 Escherichia coli Mus musculus Saccharomyces cerevisiae	14	BED BW	Meret Arter	Aug 20, 2024
GSE61065	ATAC-seq data in mouse and zebrafish limbs	Other	Danio rerio Mus musculus	3	BW SRA Run Selector	Juan J. Tena	Jan 06, 2015
GSE183002	Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Danio rerio Mus musculus	75	BED BW H5 TXT	Sanjeev Galande	Sep 02, 2021
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Danio rerio Mus musculus	34	BED BW COOL NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE47207	An integrated 5'- and 3'-end RNA sequencing platform for high-throughput transcriptome quantitation and annotation	Expression profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	10	BW TXT SRA Run Selector	Sabah Kadri	Jun 01, 2013
GSE85191	Widespread transcriptional pausing and elongation control at enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	37	BEDGRAPH BW SRA Run Selector	Karen Adelman	Mar 09, 2018
GSE119619	Synergy between variant PRC1 complexes defines Polycomb-mediated gene repression (RNA-Seq)	Other Expression profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	84	BW TXT SRA Run Selector	Nadezda A Fursova	Apr 26, 2019
GSE136424	CDK-Mediator and FBXL19 cooperate in the induction of developmental genes by promoting regulatory interactions	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	76	BW	Angelika Feldmann	Jan 21, 2020
GSE144404	Dynamic Control of Chromatin-associated m6A Methylation Regulates Nascent RNAs Stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	74	BW	Yang Shi	Feb 25, 2022
GSE198748	Nm-REP-seq Reveals 2’-O-Methylation Landscape at the 3'-end of Noncoding RNAs with Single-base Resolution	Other	Drosophila melanogaster Mus musculus	27	BW	Jian-Hua Yang	Oct 25, 2022
GSE199804	A CpG island-encoded mechanism protects genes from premature transcription termination [SET1_TTseq]	Other	Drosophila melanogaster Mus musculus	18	BW CSV	Emilia Dimitrova	Dec 22, 2022
GSE202040	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [PRO-cap]	Other	Drosophila melanogaster Homo sapiens Mus musculus	11	BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE202041	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [PRO-seq]	Other	Drosophila melanogaster Homo sapiens Mus musculus	18	BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE202042	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	78	BEDGRAPH BW	Maximilian Christian von der Linde	Jun 22, 2024