GEO Browser - GEO

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64 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Mus musculus		NARROWPEAK
GSE140363	Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	122	BED BEDGRAPH BROADPEAK BW CSV HIC NARROWPEAK SRA Run Selector	Nishana Mayilaadumveettil	Apr 14, 2020
GSE166426	Histone H1 regulates non-coding RNA turnover on chromatin in a m6A-dependent manner	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BED BW NARROWPEAK SRA Run Selector	Maria Gomez	Sep 13, 2022
GSE175618	DYSREGULATION OF THE m6A EPITRANSCRIPTOME AS A NEW MECHANISM INVOLVED IN HIPPOCAMPAL-DEPENDENT MEMORY DEFECTS IN HD MICE	Other	Mus musculus	48	BED NARROWPEAK SRA Run Selector	Ulf Vang Ørom	Jul 20, 2022
GSE183403	METTL14 is a chromatin regulator independent of its RNA N6-methyladenosine methyltransferase activity	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	98	BED BIGWIG NARROWPEAK TXT	Xiaoyang Dou	Aug 16, 2024
GSE185255	Integration of 3D genome architecture and local chromatin features uncovers enhancers underlying craniofacial-specific cartilage defects	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24	BED BEDGRAPH COOL NARROWPEAK SRA Run Selector	Qian Bian	Jan 04, 2023
GSE208742	Direct neuronal reprogramming of mouse astrocytes is associated with multiscale epigenome remodeling and requires Yy1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	64	BED BEDGRAPH BW MTX NARROWPEAK TAB TSV TXT XLSX SRA Run Selector	Boyan Bonev	Apr 30, 2024
GSE219097	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress [Bru-seq and BruUV-seq]	Other	Mus musculus	36	BED BIGWIG CSV NARROWPEAK XLSX	Brian Magnuson	Aug 30, 2023
GSE221345	Cdc73 protects Notch-induced T-cell leukemia cells from DNA damage and mitochondrial stress	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BED BIGWIG NARROWPEAK TXT	Brian Magnuson	Aug 29, 2023
GSE226204	Neurological Cockayne Syndrome Results from R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	37	BED BW NARROWPEAK TXT	Xiang-Dong Fu	Jul 29, 2024
GSE231869	Modulation of CTCF barrier permeability by ZFP661 enhances protocadherin diversity for proper cortical dendritic projection in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	102	BED BW NARROWPEAK TAR TXT	Jinpu Jin	May 09, 2023
GSE243851	Nuclear Organization of Lens Epithelium and Fiber Cells in Newborn Lens	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH BEDPE BW HIC NARROWPEAK	William Chang	Oct 16, 2023
GSE255914	Drosha loss drives pineoblastoma by upregulating Ccnd2	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Mus musculus	64	BED BIGWIG BW NARROWPEAK	Kenneth S Chen	Oct 03, 2024
GSE269258	HoxBlinc lncRNA reprograms CTCF-independent TADs to drive leukemic transcription and HSC dysregulation in NUP98 fusion transformed leukemia	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	61	BED BIGWIG BW HIC MTX NARROWPEAK TABULAR TSV	Suming Huang	Jan 31, 2025
GSE157139	CRISPR and biochemical screens identify MAZ as a co-factor in CTCF-mediated insulation at Hox clusters	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus synthetic construct	138	BEDGRAPH BW HIC NARROWPEAK TXT	Danny Reinberg	Feb 06, 2022
GSE191146	Deeply hidden genome organization mediated by base-unpairing regions (BURs) directly bound by SATB1 linked to transcription	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	38	BEDGRAPH BW HIC NARROWPEAK	Terumi Kohwi-Shigematsu	Dec 28, 2021
GSE250204	Yin Yang 1 Deficiency in Skeletal Muscle Stem Cell Aggravates Muscle Fibrosis in Duchenne Muscular Dystrophy Mouse by Disrupting Muscle Stem Cell/Macrophage/Fibro-adipogenic Progenitor Crosstalk	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	22	BEDGRAPH BW MTX NARROWPEAK TSV	QIANG SUN	Nov 27, 2024
GSE200114	Dynamic promoter-enhancer contacts contribute to spatiotemporal gene expression during mouse fetal development	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	70	BEDPE BIGWIG HIC NARROWPEAK	Ming Hu	Sep 02, 2024
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE120393	Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	107	BIGWIG BROADPEAK FPKM_TRACKING HIC NARROWPEAK TXT SRA Run Selector	Chia-Lin Wei	Jan 07, 2020
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107	BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021