GEO Browser - GEO

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34 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other	Mus musculus		MCOOL
GSE161817	DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations [HiC]	Other	Mus musculus	11	BED BW MCOOL SRA Run Selector	Tobias Neumann	Sep 15, 2022
GSE178348	TCF-1 mediates 3D genome reconfiguration during T cell development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	40	BED BW HIC MCOOL TXT	Wenliang Wang	Feb 24, 2022
GSE210289	Igh and Igk loci use different folding principles for V gene recombination due to distinct chromosomal architectures of pro-B and pre-B cells	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	36	BED BEDGRAPH HIC MCOOL TXT	Mortiz M Gaidt	Jan 15, 2023
GSE243478	4DNES54YB6TQ - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243480	4DNESH4UTRNL - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE243481	4DNESNYBDSLY - Replicate experiments of in situ Hi-C on olfactory receptor cell with DpnII	Other	Mus musculus	2	BED BW MCOOL PAIRS SRA Run Selector	4DN DCIC	Sep 19, 2023
GSE266750	GATA6 is a Novel Regulator of Gene Expression and 3D Genome in Colorectal Cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	75	BED BIGWIG MCOOL TXT	Feng Yue	Dec 19, 2024
GSE186893	STAG2 promotes the myelination transcriptional program in oligodendrocytes [Hi-C]	Other	Mus musculus	4	BEDGRAPH BEDPE HIC MCOOL SRA Run Selector	Hongtao Yu	Aug 23, 2022
GSE228876	RIF1 regulates replication origin activity and early replication timing in B cells [HI-C]	Other	Mus musculus	2	BEDGRAPH BW HIC MCOOL	Tobias Neumann	Jun 13, 2023
GSE228880	RIF1 regulates early replication timing in murine B cells.	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	69	BEDGRAPH BW HIC MCOOL	Tobias Neumann	Jun 13, 2023
GSE256246	Putative looping factor ZNF143/ZFP143 is an essential transcriptional regulator with no looping function.	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	132	BEDGRAPH BW MCOOL	Domenic Narducci	Mar 07, 2024
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107	BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021
GSE213501	Enhancer Cis Elements Instruct Promoter-Enhancer Interaction, Promoter-Enhancer Insulation and Compartmental Segregation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	30	BIGWIG HIC MCOOL	Hanbin Lu	Dec 31, 2023
GSE131784	Spen regulates X chromosome inactivation	Expression profiling by high throughput sequencing Other	Mus musculus	73	BW MCOOL TXT	samuel Collombet	Dec 08, 2019
GSE178982	Enhancer-promoter interactions and transcription are maintained upon acute loss of CTCF, cohesin, WAPL, and YY1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	173	BW MCOOL SRA Run Selector	Xavier Darzacq	Jul 15, 2021
GSE198182	A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	69	BW MCOOL TAB	Maximilian Christian von der Linde	Jan 20, 2023
GSE201852	TF co-binding to nucleosome arrays	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	116	BW MCOOL	Abdenour Soufi	Sep 27, 2024
GSE207225	Ultra-deep 3D genome structure mapping with Region Capture Micro-C	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	18	BW MCOOL	Viraat Y Goel	Jul 12, 2022
GSE250307	Decoding the determinants of genome-nuclear lamina interactions by a random scrambling approach	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	320	BW MCOOL	Bas van Steensel	Dec 19, 2023
GSE278946	PRC1 and CTCF-Mediated Transition from Poised to Active Chromatin Loops Drives Bivalent Gene Activation	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	33	BW COOL MCOOL XLSX	Zhonghua Gao	Jan 28, 2025