GEO Browser - GEO

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160 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other	Mus musculus		BED
GSE112276	Transcriptome Mapping of Internal N7-methylguanosine Methylome in Mammalian mRNA	Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	104	XLSX TXT FPKM_TRACKING BED SRA Run Selector	Li-Sheng Zhang	Apr 26, 2019
GSE127247	Control of noncoding RNA production and histone levels by a 5’ tRNA fragment	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	48	XLSX BED SRA Run Selector	Mike Levine	Jan 17, 2020
GSE164360	Epigenomic Activation of Enhancers in Granule Cell Precursors by CHARGE Syndrome Protein CHD7 Regulates Gyrification of the Mammalian Cerebellum	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	104	XLSX TXT BED SRA Run Selector	Naveen Reddy	Apr 07, 2021
GSE197548	A satellite DNA array barcodes chromosome 7 and regulates totipotency via ZFP819	Expression profiling by high throughput sequencing Other	Mus musculus	43	XLSX BW BED	Helen M. Rowe	Oct 31, 2022
GSE206694	RNA Polymerase II transcription independent of TBP (CUT&Tag)	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	83	XLSX XLS TXT BW BED	Sheila Teves	Apr 12, 2023
GSE207163	Transcriptional repression by a secondary DNA binding surface of DNA topoisomerase I safeguards against hypertranscription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	62	XLSX TXT RESULTS BW BED	Zhenhua hu	May 29, 2023
GSE208093	CLIPseq of hnRNP A1 from the spinal cords of mice with experimental autoimmune encephalomyelitis	Other	Mus musculus	22	XLSX BED	Michael C Levin	Jan 04, 2024
GSE125129	The ChAHP complex counteracts chromatin looping at Ctcf sites that have emerged from recent SINE expansions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	77	XLS WIG TXT BW BED SRA Run Selector	Fabio Mohn	Sep 05, 2019
GSE139420	In situ capture of global transcription dynamics and enhancer activity with high accuracy and sensitivity	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	XLS BIGWIG BED SRA Run Selector	Ruitu Lyu	Feb 15, 2020
GSE60738	Dynamics of gene silencing during X inactivation using allele-specific RNA-Seq	Expression profiling by high throughput sequencing Other	Mus musculus	20	WIG TXT BED SRA Run Selector	Hendrik Marks	Jun 15, 2015
GSE72720	CTCF binding polarity determines chromatin looping	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	506	WIG BED	Elzo de Wit	Oct 29, 2015
GSE84899	Cdx and T Brachyury co-activate growth signaling in the embryonic axial progenitor niche.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	55	WIG CSV BW BED SRA Run Selector	Jacqueline Deschamps	Dec 20, 2016
GSE88817	In situ CAPTURE of chromatin interactions by biotinylated dCas9	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	175	WIG BED	Jian Xu	Aug 24, 2017
GSE112136	Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	90	WIG TSV MATRIX BED	Dirk Schuebeler	Apr 18, 2019
GSE139117	Analysis of CRE-mediated chromatin interactions by CAPTURE2.0	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	105	WIG BW BED	Jian Xu	Feb 20, 2020
GSE155882	A Transcriptional Switch Governs Fibroblast Activation in Heart Disease	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	56	WIG TSV MTX CSV BW BIGWIG BED SRA Run Selector	Pawel Przytycki	Apr 08, 2021
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	WIG BED SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus synthetic construct	271	VCF TSV SEG MTX BED	Mark Dawson	Nov 08, 2021
GSE67955	The landscape of global-long range interactions in mouse and human blood cell lines mediated by Yy1, GATA1, and CTCF during differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	18	TXT BED SRA Run Selector	Marissa Macchietto	Apr 30, 2019
GSE68582	Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State During Somatic Cell Reprogramming	Other Expression profiling by high throughput sequencing	Mus musculus	20	TXT BED SRA Run Selector	Jennifer E Phillips-Cremins	May 05, 2016