GEO Browser - GEO

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162 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other	Mus musculus		BED
GSE161676	Identifying non-genetic determinants of malignant clonal fitness at single cell resolution	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	271	BED MTX SEG TSV VCF	Mark Dawson	Nov 08, 2021
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus Homo sapiens Drosophila melanogaster	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE60738	Dynamics of gene silencing during X inactivation using allele-specific RNA-Seq	Expression profiling by high throughput sequencing Other	Mus musculus	20	BED TXT WIG SRA Run Selector	Hendrik Marks	Jun 15, 2015
GSE67955	The landscape of global-long range interactions in mouse and human blood cell lines mediated by Yy1, GATA1, and CTCF during differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	18	BED TXT SRA Run Selector	Marissa Macchietto	Apr 30, 2019
GSE68582	Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State During Somatic Cell Reprogramming	Other Expression profiling by high throughput sequencing	Mus musculus	20	BED TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 05, 2016
GSE72720	CTCF binding polarity determines chromatin looping	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	506	BED WIG	Elzo de Wit	Oct 29, 2015
GSE76248	MiCEE: a ncRNA-protein complex mediates epigenetic silencing and nucleolus organization	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Mus musculus	12	BED BEDGRAPH TXT SRA Run Selector	Guillermo Barreto	Apr 06, 2018
GSE76420	LncRNA DINO guides DNA damage signaling	Expression profiling by array Other Expression profiling by high throughput sequencing	Mus musculus Homo sapiens	56	BED NARROWPEAK	Adam Schmitt	Dec 30, 2015
GSE77447	In vivo genome-wide profiling reveals a tissue-specific role for 5-formylcytosine	Other	Mus musculus	20	BED SRA Run Selector	Dario Beraldi	May 31, 2016
GSE79062	ATAC-seq of sorted lung cDCs (conventional dendritic cells) from cell-specific MyD88 KO at 0h and 6h in vivo sensitization with OVA/standard flagellin	Other	Mus musculus	8	BED SRA Run Selector	Seddon Thomas	Mar 10, 2018
GSE79615	MYD88-dependent dendritic and epithelial cell crosstalk in the lung orchestrates immune responses to inhaled allergens	Expression profiling by array Other	Mus musculus	92	BED CEL CHP RCC	Seddon Thomas	Mar 10, 2018
GSE84899	Cdx and T Brachyury co-activate growth signaling in the embryonic axial progenitor niche.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	55	BED BW CSV WIG SRA Run Selector	Jacqueline Deschamps	Dec 20, 2016
GSE85164	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome	Expression profiling by high throughput sequencing Other	Mus musculus Homo sapiens Drosophila melanogaster	90	BED BIGWIG	Asifa Akhtar	Mar 28, 2017
GSE85185	YY1 and CTCF Orchestrate a 3D Chromatin Looping Switch during Early Neural Lineage Commitment	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED NARROWPEAK TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 22, 2017
GSE88817	In situ CAPTURE of chromatin interactions by biotinylated dCas9	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Homo sapiens	175	BED WIG	Jian Xu	Aug 24, 2017
GSE89598	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [XL9 DHX9 FLASH CLIP-seq]	Other	Mus musculus	4	BED BIGWIG GFF SRA Run Selector	Asifa Akhtar	Mar 28, 2017
GSE89646	Impact of the gut microbiota on enhancer accessibility in gut intraepithelial lymphocytes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	BED SRA Run Selector	Jeffrey Gordon	Nov 28, 2016
GSE89751	DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [XL8 DHX9 FLASH CLIP-seq]	Other	Mus musculus	4	BED BIGWIG GFF SRA Run Selector	Asifa Akhtar	Mar 28, 2017
GSE89960	An environment-dependent transcriptional network regulates human microglia phenotypes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	41	BED CSV SRA Run Selector	Dylan Derik Skola	May 25, 2017
GSE90561	Sox2 is required for functional chromatin connectivity in brain-derived neural stem cells.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	65	BED BEDGRAPH BEDPE TXT	Federico Zambelli	Mar 07, 2019