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2284 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			TSV
GSE254584	Premeiotic 24-nt phasiRNAs are present in the Zea genus and unique in biogenesis mechanism and molecular function.	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Zea mays subsp. parviglumis Zea mays subsp. mexicana Zea mays subsp. mays Zea luxurians	216	TSV	Junpeng Zhan	May 14, 2024
GSE120304	Widespread Long-range Cis-Regulatory Elements in the Maize Genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Zea mays	81	BED TSV TXT SRA Run Selector	Robert J Schmitz	Sep 19, 2019
GSE262376	Quantitative RNA pseudouridine maps reveal multi-layered translation control through plant rRNA, tRNA and mRNA pseudouridylation (maize)	Expression profiling by high throughput sequencing Other	Zea mays	4	TSV	Chang Ye	Jan 15, 2025
GSE268872	Small Molecule-Catalyzed Deamination: Applications in Transcriptome-Wide Profiling of N6-Methyladenosine in RNA (Maize)	Other	Zea mays	3	TSV	Chang Ye	Jan 08, 2025
GSE226467	5-formylcytosine is an activating epigenetic mark for RNA Pol III during zygotic reprogramming	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Xenopus tropicalis	32	BW TSV	Emil Karaulanov	Aug 29, 2024
GSE245313	Characterization of regeneration initiating cells during Xenopus laevis tail regeneration [spatial transcriptomics]	Other	Xenopus laevis	3	CSV JPG JSON MTX PNG TSV XLSX	Radek Sindelka	Nov 30, 2023
GSE245320	Characterization of regeneration initiating cells during Xenopus laevis tail regeneration	Expression profiling by high throughput sequencing Other	Xenopus laevis	63	CSV JPG JSON MTX PNG TSV XLSX	Radek Sindelka	Nov 30, 2023
GSE228220	Pathogen dynamics and discovery of novel viruses and enzymes by deep nucleic acid sequencing of wastewater	Other	wastewater metagenome	239	FA TSV	Emanuel Wyler	Apr 13, 2023
GSE134189	Illumina sequencing of PCR products derived from TBLV-induced tumors in the presence and absence of Rem	Other	Viruses	6	FASTA TSV SRA Run Selector	Dennis Cates Wylie	Jul 13, 2019
GSE250408	TsrA regulates gene expression of horizontally acquired elements in Vibrio cholerae via both H-NS dependent and independent mechanisms	Expression profiling by high throughput sequencing Other	Vibrio cholerae	76	BEDGRAPH H5 TSV	Yulduz Rakibova	Feb 09, 2024
GSE107185	SEUSS: A scalable screening platform to assess transcriptomic and fitness effects of transcription factor overexpression	Expression profiling by high throughput sequencing Other	unidentified plasmid Homo sapiens	18	CSV TSV TXT SRA Run Selector	Yan Wu	Sep 24, 2018
GSE149875	Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue [plasmid]	Other	unidentified plasmid	1	FASTA TSV TXT SRA Run Selector	Stephen Gisselbrecht	Dec 08, 2021
GSE149908	Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue	Other	unidentified plasmid Drosophila melanogaster	19	FASTA TSV TXT	Stephen Gisselbrecht	Dec 08, 2021
GSE150858	Barcoded viral tracing of single-cell interactions in CNS inflammation	Other Expression profiling by high throughput sequencing	unidentified plasmid Suid alphaherpesvirus 1 Mus musculus	128	CSV TAR TSV TXT ZIP	Michael Wheeler	Apr 22, 2021
GSE216589	Comparing the microbiota composition between HPV positive and negative patients with CRC	Other	unidentified Homo sapiens	22	FASTA TSV	Matteo Ramazzotti	Oct 15, 2023
GSE212920	Identification of mRNAs associated with the protein complex ZC3H41/Z41AP (Tb927.11.1980/Tb927.7.7460) in Trypanosoma brucei	Expression profiling by high throughput sequencing Other	Trypanosoma brucei brucei	4	TSV	Antonio M Estevez	Mar 29, 2023
GSE133885	Chromatin architecture in hexaploid wheat is hierarchically organized around genome territories and transcription factories	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Triticum aestivum Brassica napus	10	BIGWIG NARROWPEAK TSV TXT	Lorenzo Concia	Mar 02, 2020
GSE299028	Multiplexed DNA Affinity purification sequencing (multiDAP-seq) and single-nuclei RNA-seq of flowering plants	Other	Thlaspi arvense Sorghum bicolor Solanum tuberosum Solanum lycopersicum Populus trichocarpa Panicum hallii Oryza sativa Fragaria vesca Capsella rubella Camelina sativa Brassica oleracea Brachypodium distachyon Arabidopsis thaliana Arabidopsis lyrata	3096	BW MTX NARROWPEAK TSV TXT	Sharon Greenblum	Jun 05, 2025
GSE209901	RNA-DNA interactome of a prokaryotic cell uncovered by proximity ligation	Other	Thermofilum adornatum Escherichia coli Bacillus subtilis	6	TSV	Grigory Evko	Apr 07, 2023
GSE99978	Thiol-linked alkylation for the metabolic sequencing of RNA	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	synthetic construct Mus musculus	141	TSV TXT	Brian Reichholf	Sep 23, 2017