GEO Browser - GEO

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523 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			NARROWPEAK
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE137771	3D chromosome structure reveals unique signatures involved in mouse female germline stem cells and their development	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	NARROWPEAK TXT SRA Run Selector	Ji Wu	Jan 20, 2022
GSE214264	3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	101	BROADPEAK BW CSV NARROWPEAK NCC TSV TXT	David Lando	Jan 19, 2024
GSE213207	5hmC and m6a modification and Translatomes of monocytes and macrophages	Other	Homo sapiens	52	BW NARROWPEAK	RENHUA SONG	Feb 07, 2024
GSE213203	5hmC modification of monocytes and macrophages	Other	Homo sapiens	24	BW NARROWPEAK	RENHUA SONG	Feb 07, 2024
GSE60141	A Comprehensive Atlas of Arabidopsis Regulatory DNA [DAP-seq]	Other	Arabidopsis thaliana Zea mays	936	NARROWPEAK SRA Run Selector	Joseph R Ecker	May 25, 2016
GSE128952	A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	32	BED BEDGRAPH HIC NARROWPEAK TXT SRA Run Selector	Sizun Jiang	Dec 22, 2022
GSE125672	A Mediator-cohesin axis controls heterochromatin domain formation.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	58	BED BROADPEAK NARROWPEAK TXT	Robin H. van der Weide	Jan 11, 2022
GSE202966	A Multi-Organoid Platform Identifies CIART as a Key Factor for SARS-CoV-2 Infection [CUT&RUN]	Other	Homo sapiens	3	BW NARROWPEAK	Shuibing Chen	Dec 07, 2022
GSE202967	A Multi-Organoid Platform Identifies CIART as a Key Factor for SARS-CoV-2 Infection.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	84	BW MTX NARROWPEAK TSV	Shuibing Chen	Dec 07, 2022
GSE200062	A SOX2 engineered epigenetic silencer factor represses the glioblastoma genetic program	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	41	BED NARROWPEAK TSV	Luca Massimino	Aug 10, 2022
GSE101717	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	BEDGRAPH MATRIX NARROWPEAK TAR TXT	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE117283	A bipartite boundary element restricts UBE3A imprinting to mature neurons	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	12	BIGBED BIGWIG BW NARROWPEAK SRA Run Selector	Justin Cotney	Jan 07, 2019
GSE143288	A compendium map of Cis-Regulatory Elements in the Pig Genome and epigenetic comparison with the human Genome	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	200	BED BEDGRAPH BIGWIG NARROWPEAK SRA Run Selector	Shuhong Zhao	Feb 26, 2021
GSE247151	A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci [CUT&RUN chromodomains in S2 cells]	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	35	BED BROADPEAK BW NARROWPEAK	Susanne Bornelöv	Apr 18, 2025
GSE232887	A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED BW COOL HIC NARROWPEAK	Marco Osterwalder	Jun 01, 2024
GSE175521	A genetic disorder reveals a hematopoietic stem cell regulatory network co-opted in leukemia	Expression profiling by high throughput sequencing Other	Homo sapiens	1751	BW H5 NARROWPEAK TXT	Liming Tao	Nov 23, 2022
GSE254776	A genome-wide screen identifies silencers with distinct chromatin properties and mechanisms of repression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	54	BW NARROWPEAK TSV	Alexander Stark	Nov 19, 2024
GSE78873	A long noncoding RNA lincRNA-EPS acts as a transcriptional brake to restrain inflammation	Other	Mus musculus	12	NARROWPEAK SRA Run Selector	Howard Chang	May 08, 2016
GSE134055	A map of cis-regulatory elements and 3D genome structures in zebrafish	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	204	BED BW HIC NARROWPEAK TXT SRA Run Selector	Yu Luan	Sep 04, 2020