GEO Browser - GEO

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105 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			BROADPEAK
GSE114950	The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	28	BROADPEAK MATRIX NARROWPEAK TXT SRA Run Selector	Hui Zhang	May 25, 2019
GSE123105	Selective roles of vertebrate PCF11 in premature and full-length transcript termination	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens	95	BED BEDGRAPH BROADPEAK BW	Kinga Kamieniarz-Gdula	Feb 25, 2019
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE247151	A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci [CUT&RUN chromodomains in S2 cells]	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	35	BED BROADPEAK BW NARROWPEAK	Susanne Bornelöv	Apr 18, 2025
GSE248701	A noncanonical role of roX RNAs in autosomal epigenetic repression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	24	BROADPEAK BW TXT	Qing Ma	Nov 19, 2024
GSE280439	Proliferation and differentiation of intestinal stem cells depends on the zinc finger transcription factor BCL11/Chronophage	Other	Drosophila melanogaster	4	BROADPEAK BW XLS	Stefan Peidli	Oct 28, 2024
GSE35585	RIP-seq from ENCODE/SUNY Albany	Other	Homo sapiens	8	BIGWIG BROADPEAK TXT SRA Run Selector	ENCODE DCC	Jun 06, 2012
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32	BAM BED BIGWIG BROADPEAK NARROWPEAK TXT WIG	ENCODE DCC	Nov 19, 2014
GSE76922	Comprehensive molecular phenotypic effects of the large deletion on chromosome 22q11.2	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	59	BROADPEAK FPKM_TRACKING NARROWPEAK TXT SRA Run Selector	Xianglong Zhang	Sep 05, 2017
GSE90634	SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	78	BED BROADPEAK NARROWPEAK TXT SRA Run Selector	Cigall Kadoch	Sep 25, 2017
GSE93997	Chromatin structure alteration regulates key transcription factor expression during blood cell differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	20	BED BROADPEAK TXT	Yanjian Li	Mar 07, 2018
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	333	BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018
GSE111924	Osmostress induced changes of chromatin architecture and transcription in mammalian cells	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	59	BROADPEAK NARROWPEAK TSV	Francesc Posas	Nov 23, 2018
GSE115046	Massively parallel characterization of regulatory dynamics during neural induction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	110	BROADPEAK NARROWPEAK	Anat Kreimer	Oct 23, 2019
GSE117513	Inhibition of BET proteins rescues neural defects in Rett syndrome	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	65	BED BROADPEAK	Yoshiaki Tanaka	Jun 12, 2020
GSE117888	Role of GR in protection of podocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	16	BEDGRAPH BROADPEAK GTF HIC NARROWPEAK SRA Run Selector	Jingping Yang	May 23, 2021
GSE118629	A prostate cancer chromatin interaction map	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	35	BED BROADPEAK TXT SRA Run Selector	Suhn K Rhie	Sep 13, 2019
GSE118633	SAMMY-seq, H3K9me3 and H3K27me3 ChIP-seq and RNA-seq of control and progeria fibroblasts	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	76	BED BIGWIG BROADPEAK BW TSV SRA Run Selector	Chiara Lanzuolo	Sep 05, 2020
GSE120637	A technique to detect native R-loops genome-wide without immunoprecipitation	Other	Homo sapiens	37	BROADPEAK BW SRA Run Selector	Roberto Bonasio	Oct 18, 2019