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446 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other			BEDPE
GSE146901	3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemial (T-ALL)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	52	BEDPE BW H5 HIC TXT XLS SRA Run Selector	Hong Wu	Mar 20, 2021
GSE169120	3D chromatin topography of LSK cells with hyperactivated Notch1 and/or Tcf7 knock-out [HiC-seq]	Other	Mus musculus	6	BEDPE HIC SRA Run Selector	Nadine Fournier	Jan 21, 2022
GSE246125	3D genome topology distinguishes molecular subgroups of medulloblastoma	Expression profiling by high throughput sequencing Other	Homo sapiens	55	BEDGRAPH BEDPE BW HIC TSV WIG	Marco Gallo	Sep 29, 2024
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE228246	3D genomics analysis identifies enhancer hijacking caused by structural alterations and extrachromosomal circular DNA formation [HiChIP]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	24	BEDPE	Xiaoyang Zhang	Apr 02, 2024
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE160768	A Quantitative Epistasis Framework For Interrogating the Network of Enhancers	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	58	BEDPE XLSX SRA Run Selector	xueqiu lin	Aug 12, 2022
GSE137274	A WIZ/Cohesin/CTCF complex anchors DNA loops to define gene expression and cell identity [Hi-C]	Other	Mus musculus	4	BEDPE HIC TXT SRA Run Selector	Jill Dowen	Apr 14, 2020
GSE153574	A cohesin cancer mutation reveals a role for the hinge domain in genome organization and gene expression [Hi-C]	Other	Mus musculus	4	BEDPE HIC SRA Run Selector	Zachary Carico	Feb 23, 2021
GSE86189	A compendium of promoter-centered long-range chromatin interactions in diverse human tissues and cell types	Other	Homo sapiens	249	BEDPE FPKM_TRACKING TXT SRA Run Selector	Inkyung Jung	Jul 31, 2019
GSE280493	A histone hyperacetylation pulse induces cellular memory of gene expression and 3-dimensional genome folding [microC_1]	Other	Mus musculus	6	BEDPE MCOOL	Marco Di Stefano	Nov 22, 2024
GSE280495	A histone hyperacetylation pulse induces cellular memory of gene expression and 3-dimensional genome folding [microC_2]	Other	Mus musculus	5	BEDPE MCOOL	Marco Di Stefano	Nov 22, 2024
GSE143465	A phase separation mechanism underscores development of cancer and aberrant organization of three-dimensional chromatin structure [Hi-C]	Other	Homo sapiens	8	BEDPE HIC SRA Run Selector	Douglas H Phanstiel	Apr 19, 2021
GSE166177	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [HiChIP]	Other	Mus musculus	6	BEDPE HIC TXT SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE133928	A topological atlas reveals layers of genome reorganization in colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	175	BED BEDPE BW CPG MATRIX TXT SRA Run Selector	Alejandro Reyes	Aug 24, 2020
GSE214796	ASCL1 a pioneer factor that induces subtype switching and characterizes adrenergic neuroblastoma	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	44	BED BEDPE BW NARROWPEAK	Tze King Tan	Nov 21, 2023
GSE162609	ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	185	BEDPE BW WIG	Jinxiu Li	Jan 01, 2023
GSE162068	ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [HiChIP]	Other	Homo sapiens	4	BEDPE SRA Run Selector	Jinxiu Li	Jan 01, 2023
GSE230526	Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	90	BEDPE BW COOL NARROWPEAK	Yinghui Li	Mar 01, 2024
GSE230292	Aberrant non-canonical NF-κB signalling reprograms the epigenome landscape to drive oncogenic transcriptomes in multiple myeloma [HICHIP]	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	2	BEDPE COOL	Yinghui Li	Mar 01, 2024