GEO Browser - GEO

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144 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other			HIC
GSE169548	In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation [Capture-C]	Other	Mus musculus	6	HIC SRA Run Selector	Rafael Domínguez Acemel	May 05, 2022
GSE169561	In vivo dissection of a clustered-CTCF domain boundary reveals developmental principles of regulatory insulation	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BW HIC	Rafael Domínguez Acemel	May 05, 2022
GSE166177	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [HiChIP]	Other	Mus musculus	6	BEDPE HIC TXT SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE164343	Mitotic bookmarking by H3K27 acetylation is critical for rapid transcriptional, but not architectural, resetting of stem cell-related genes and enhancers upon G1 entry [HiC]	Other	Mus musculus	16	HIC SRA Run Selector	Effie Apostolou	Mar 01, 2021
GSE193967	Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection [Hi-C]	Other	Mus musculus	4	HIC	Edgar Mauricio Barajas-Mora	Dec 05, 2022
GSE193968	Enhancer-instructed chromatin folding and compartmentalization dictate Vκ repertoire rearrangement to combat bacterial infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BIGWIG HIC	Edgar Mauricio Barajas-Mora	Dec 05, 2022
GSE171749	SETDB1/NSD dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	88	BED BROADPEAK BW HIC TXT SRA Run Selector	Amandine BARRAL	Jan 25, 2022
GSE157666	Single-cell profiling of histone modifications in the mouse brain	Other	Mus musculus	3	HIC SRA Run Selector	Marek Bartosovic	Feb 10, 2021
GSE249646	Locus folding mechanisms determine modes of antigen receptor gene assembly (Hi-C)	Other	Mus musculus	10	HIC	Craig Bassing	Jan 04, 2024
GSE265888	Loop Stacking Attenuates Chromatin Boundaries in TCR Loci During Thymocyte Development	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	92	BED BEDGRAPH BEDPE BROADPEAK BW CSV HIC MATRIX TXT	Hao bingtao	Apr 27, 2024
GSE197024	Epigenetic modules governing skin epidermal homeostasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	46	BED BEDPE HIC TXT	Stephen R Brooks	Jan 13, 2023
GSE206556	Epigenetic modules governing skin epidermal homeostasis [III]	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	22	BED BEDPE HIC TXT	Stephen R Brooks	Jan 12, 2023
GSE217823	Proximity-dependent recruitment of Polycomb Repressive Complexes by the lncRNA Airn [Hi-C]	Other	Mus musculus	20	HIC	Joseph Mauro Calabrese	Jul 01, 2023
GSE153574	A cohesin cancer mutation reveals a role for the hinge domain in genome organization and gene expression [Hi-C]	Other	Mus musculus	4	BEDPE HIC SRA Run Selector	Zachary Carico	Feb 23, 2021
GSE168524	NEURON-SPECIFIC CHROMOSOMAL MEGADOMAIN ORGANIZATION IS ADAPTIVE TO RECENT RETROTRANSPOSON EXPANSIONS	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus Mus spretus	72	HIC TXT XLS SRA Run Selector	Sandhya Chandrasekaran	Oct 11, 2021
GSE243851	Nuclear Organization of Lens Epithelium and Fiber Cells in Newborn Lens	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH BEDPE BW HIC NARROWPEAK	William Chang	Oct 16, 2023
GSE247940	Regulation of transcriptional signal integration and memory by inflammation-induced chromosome conformation [Hi-C]	Other	Mus musculus	10	BEDPE HIC	Andy Chen	Dec 31, 2024
GSE247946	Regulation of transcriptional signal integration and memory by inflammation-induced chromosome conformation	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	132	BW HIC	Andy Chen	Dec 31, 2024
GSE186411	Hnrnpk is essential for embryonic limb bud development as a transcription activator and insulator collaborator	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	34	BW HIC TXT SRA Run Selector	Yuyu Chen	Apr 15, 2024
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020