GEO Browser - GEO

Series

Samples

Platforms

DataSets

396 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Other			BW
GSE219068	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment	Other	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	356	BW	Changbin Sun	Jun 11, 2024
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE249786	Mitochondrial RNA-seq and total RNA-seq of 293T, HeLa, and N2a cells; RIP-seq of SUPV3L1, ceSUPV3L1, ATP5B, and TRAP1; Small RNA-seq of 293T mitochondrial fractions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans Homo sapiens Mus musculus	36	BW CSV TXT	Xu Liu	Dec 19, 2023
GSE202040	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [PRO-cap]	Other	Drosophila melanogaster Homo sapiens Mus musculus	11	BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE202042	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	78	BEDGRAPH BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE223253	Autonomous transposons tune their sequences to ensure somatic suppression [FLASH]	Other	Drosophila melanogaster Homo sapiens Mus musculus	82	BW	IBRAHIM AVSAR ILIK	Jan 08, 2024
GSE223263	Autonomous transposons tune their sequences to ensure somatic suppression.	Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	153	BW TXT	IBRAHIM AVSAR ILIK	Jan 08, 2024
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE211736	Joint epigenome profiling reveals cell-type-specific gene regulatory programs in human cortical organoids	Expression profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Mus musculus	27	BW FA PICKLE TAB TSV TXT SRA Run Selector	Boyan Bonev	Aug 23, 2023
GSE219069	ssDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment	Other	Escherichia coli Homo sapiens Mus musculus	6	BW	Changbin Sun	Jun 12, 2024
GSE185775	Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Gallus gallus Monodelphis domestica Mus musculus	88	BW HIC	Michael I Robson	Sep 29, 2022
GSE87064	The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	868	BED BW MTX TSV TXT	Beisi Xu	May 03, 2017
GSE144336	Defining genome architecture at base-pair resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	40	BW SRA Run Selector	Peng Hua	Apr 16, 2021
GSE153651	m6A directs the demethylation of histone H3K9me2 co-transcriptionall	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	BED BW TXT SRA Run Selector	linjian xia	Jul 01, 2020
GSE171758	Profiling histone modifications in clinical archived formalin fixed paraffin embedded samples	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	60	BW TXT SRA Run Selector	xingqi chen	Sep 03, 2021
GSE175803	m6Am RNA methyltransferases PCIF1 regulate tumorigenesis of colorectal cancer and its immune responses to anti-PD-1 therapy	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	26	BW CSV TSV TXT SRA Run Selector	Lingling Wang	Nov 12, 2022
GSE176066	NicE-C efficiently reveals open chromatin associated chromosome interactions at high resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	32	BW HIC SRA Run Selector	Zhengyu Luo	Jan 18, 2022
GSE180175	Hi-TrAC reveals fine-scale chromatin structures organized by transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	136	BEDPE BW TXT SRA Run Selector	Yaqiang Cao	Oct 02, 2022
GSE182304	Locus-specific chromatin profiling of evolutionarily young transposable elements [HiChIP]	Other	Homo sapiens Mus musculus	3	BW SRA Run Selector	Miguel R Branco	Aug 19, 2021
GSE182305	Locus-specific chromatin profiling of evolutionarily young transposable elements [Hi-C]	Other	Homo sapiens Mus musculus	3	BW SRA Run Selector	Miguel R Branco	Aug 19, 2021