GEO Browser - GEO

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41 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Other			WIG
GSE88817	In situ CAPTURE of chromatin interactions by biotinylated dCas9	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	175	BED WIG	Jian Xu	Aug 24, 2017
GSE139117	Analysis of CRE-mediated chromatin interactions by CAPTURE2.0	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	105	BED BW WIG	Jian Xu	Feb 20, 2020
GSE203049	AGO2 silences mobile transposons in the nucleus of quiescent cells	Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Mus Mus musculus	32	BW WIG	Joana A Vidigal	Jul 18, 2022
GSE193718	Gene silencing dynamics are modulated by transiently active regulatory elements [4C-seq]	Other	Mus musculus	26	WIG	Marit W. Vermunt	Feb 14, 2023
GSE193825	Gene silencing dynamics are modulated by transiently active regulatory elements	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	117	BW WIG	Marit W. Vermunt	Feb 14, 2023
GSE147292	Investigating the role of IL-2 in shaping the epigenome in T cells [DNAse-seq]	Other	Mus musculus	17	WIG SRA Run Selector	Csilla Varnai	Sep 14, 2020
GSE147294	Investigating the role of IL-2 in shaping the epigenome in T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	45	TSV WIG	Csilla Varnai	Sep 14, 2020
GSE97871	Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	88	BW WIG	Jelena M Telenius	Jun 14, 2017
GSE129707	Dinucleotide regulation by REXO2 maintains promoter specificity in mammalian mitochondria	Expression profiling by high throughput sequencing Other	Mus musculus	12	TXT WIG SRA Run Selector	Stefan J Siira	Oct 03, 2019
GSE112136	Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	90	BED MATRIX TSV WIG	Dirk Schuebeler	Apr 18, 2019
GSE234295	Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	124	MCOOL WIG	Dirk Schuebeler	Mar 11, 2024
GSE129735	KDM4A mediates maternal zygotic transition in mammals	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	164	TXT WIG	Aditya Sankar	Jan 27, 2020
GSE108639	Simultaneous quantifications of protein-DNA contacts and transcriptomics in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	28	TSV WIG	Koos Rooijers	Apr 21, 2019
GSE123586	Simultaneous quantifications of protein-DNA contacts and transcriptomics in single cells (mESC data)	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	17	TSV WIG SRA Run Selector	Koos Rooijers	Apr 21, 2019
GSE155882	A Transcriptional Switch Governs Fibroblast Activation in Heart Disease	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	56	BED BIGWIG BW CSV MTX TSV WIG SRA Run Selector	Pawel Przytycki	Apr 08, 2021
GSE125129	The ChAHP complex counteracts chromatin looping at Ctcf sites that have emerged from recent SINE expansions	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	77	BED BW TXT WIG XLS SRA Run Selector	Fabio Mohn	Sep 05, 2019
GSE60738	Dynamics of gene silencing during X inactivation using allele-specific RNA-Seq	Expression profiling by high throughput sequencing Other	Mus musculus	20	BED TXT WIG SRA Run Selector	Hendrik Marks	Jun 15, 2015
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE207793	The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae	100	BW TAB WIG	Junwoo Lee	Jun 01, 2023
GSE173354	Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression	Other	Mus musculus	27	HDF5 HIC WIG SRA Run Selector	Peter Krijger	Jun 30, 2021