GEO Browser - GEO

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53 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Other			BW
GSE82255	Destabilization of B2 RNA by EZH2 activates the stress response	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	61	BED BW TXT SRA Run Selector	Athanasios Zovoilis	Dec 19, 2016
GSE86464	HNRNPA2B1 regulates alternative RNA processing in the nervous system and accumulates in granules in ALS IPSC-derived motor neurons	Expression profiling by array Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Homo sapiens Mus musculus	124	BED BW CEL CSV	Gene Yeo	Oct 20, 2016
GSE210317	Active DNA demethylation promotes cell fate specification and the DNA damage response	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	121	BW TXT	Wei Wu	Dec 01, 2022
GSE144716	Gene regulation by gonadal hormone receptors defines brain sex differences-[CUT&RUN]	Other	Homo sapiens Mus musculus	34	BW NARROWPEAK SRA Run Selector	Melody Wu	Apr 20, 2022
GSE144718	Gene regulation by gonadal hormone receptors defines brain sex differences	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	95	BW NARROWPEAK TSV	Melody Wu	Apr 20, 2022
GSE95116	The nuclear matrix associating protein HNRNPU functions as a key regulator of 3D genome architecture	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BW HIC TXT	Bo Wen	Dec 03, 2017
GSE233842	Transcription and DNA Replication Shapes DNA Break Dynamics in Long Neuronal Genes	Other	Mus musculus	79	BW TLX	Pei-Chi Wei	Mar 18, 2024
GSE202042	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	78	BEDGRAPH BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE178230	Screening thousands of transcribed coding and non-coding regions reveals sequence determinants of RNA polymerase II elongation potential.	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	58	BEDGRAPH BW FA TXT SRA Run Selector	Hanneke Vlaming	Apr 06, 2022
GSE146999	Start codon disruption with CRISPR/Cas9 prevents murine Fuchs' endothelial corneal dystrophy	Other	Homo sapiens Mus musculus	6	BW	Hironori Uehara	Sep 01, 2020
GSE97871	Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	88	BW WIG	Jelena M Telenius	Jun 14, 2017
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE74356	Long Neural Genes Harbor Recurrent DNA Break Clusters in Neural Stem/Progenitor Cells	Other Expression profiling by high throughput sequencing	Mus musculus	88	BW TXT SRA Run Selector	Bjoern Schwer	Feb 15, 2016
GSE116208	TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer	Methylation profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	83	BW	Anjana Rao	Apr 29, 2019
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BEDGRAPH BEDPE BIGWIG BW HIC TXT WIG	Sergio Niñerola	Dec 04, 2023
GSE199338	H3K4me3 associated chromatin by CUT&RUN on c-kit+ cells from chimeras	Other	Mus musculus	7	BW	Julie Ng	Mar 24, 2023
GSE275427	Functional maps of a genomic locus reveal confinement of an enhancer by its target gene	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1057	BED BW MCOOL NARROWPEAK	Christina J.I. Moene	Aug 21, 2024
GSE110604	Characterization of tissue-specific BMAL1 cistromes reveals new roles for enhancer-enhancer interactions in regulating rhythmic transcription	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BED BW	Jerome Menet	May 08, 2018
GSE161602	Genome-wide maps of RNA-protein interactions of SRSF3, hnRNPK and CPSF6	Other	Mus musculus	5	BW SRA Run Selector	Akio Masuda	Jul 20, 2021
GSE129529	Topoisomerase II-induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	73	BW TXT	Yaakov Maman	Apr 24, 2019